Colwellia sp. PAMC 21821: A3Q33_01170
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Entry
A3Q33_01170 CDS
T04816
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
A3Q33_01170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
colw03400
]
A3Q33_01170
Enzymes [BR:
colw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
A3Q33_01170
DNA repair and recombination proteins [BR:
colw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
A3Q33_01170
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A3Q33_01170
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A3Q33_01170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ARD43060
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All DBs
Position
304303..305778
Genome browser
AA seq
491 aa
AA seq
DB search
MDKMNQNSSAQNTQDQATILWHDYETWGISPKFDKPSQFAGIRTDLDLNIIGEPEMFYCQ
PPQDYLPQPEACLVTGITPQKALREGLTEAEFADRIHGLFTQPNTCVAGYNSIRFDDEVT
RYLLYRNFYDPYAREWQNGNSRWDIIDMVRACYALRPEGIEWPTVERDGEQVVSFRLELL
TEANGISHEAAHDAMSDVYATIAMAKLIKEKQPKLYEFIFNLKNKKQVAELIDVYNMTPV
VHTSSKVSSVHGCTSWFAPVCYHPINKNAVIAVDLARDPTPLFELSSEEIKARLYTRYDE
LDEGELPIPIKLIHLNKCPIVAPAKTLLPENAERLAIPRELCLENLKRLKQYTELRDKLT
DVFAESDFGDEPVEAEFALYGGKFFSHSDKAQMDILHQLAPEQLGTHPFQFQDERLNILL
FSYRARNFPYTLDDGEQQKWQAHCQNRLQHGKKGLLSVDEFMIKIEDLAHQHEQNQPKMA
VLKALYEYVQS
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatgaatcagaactcttcagcccaaaacactcaagaccaagctactatcctc
tggcacgattatgagacctggggaatatcaccaaaattcgacaagccttcgcagtttgcc
ggtattcgtaccgatcttgatttaaatattattggtgagcctgagatgttttattgtcag
ccgccacaagactatctgccgcaacctgaggcttgtttagttaccggtattacgccgcaa
aaagctttgcgtgaagggttaactgaagctgagtttgctgaccgtattcatgggttgttt
acccaacctaatacttgtgttgctgggtataacagtattcgttttgatgatgaggtaact
cgctacctgctctatcgtaacttttacgacccttatgcgcgcgaatggcaaaatggtaat
agtcgttgggatattattgatatggtgcgcgcttgctatgcattgcgccctgaaggtatt
gaatggccaacggttgaacgcgatggcgagcaagtggttagctttcgtttagagttgctg
acagaagcgaatggcattagccatgaagccgcgcatgacgccatgagtgatgtttatgcc
actattgcgatggcaaaactgattaaagaaaaacagcctaagttatatgagtttattttt
aatttgaagaataaaaagcaagtggctgagctaattgacgtttataacatgacgcctgtt
gtgcatacctctagcaaggtatcttcagtgcatggttgcacgagttggtttgcgccggtt
tgttatcatccgattaataaaaatgcggttattgctgtcgatttagcgcgtgatcctacg
ccgttatttgagctttcaagtgaagagattaaagcgcgtttatatacccgttatgatgag
ttagacgaaggtgaattaccaattcccattaagttaattcatttaaataagtgccctatt
gtcgcgcctgcaaaaaccttgttgcctgaaaatgccgagcgtttggctattcctcgtgag
ctttgtcttgagaatctaaaaagacttaaacaatatactgagcttagagataagttaacc
gatgtttttgccgaaagtgattttggtgatgaaccggttgaagctgagtttgcactttat
ggtggcaagtttttctcgcatagcgataaagcgcaaatggatattttgcatcaattagcg
ccagagcaattaggtacgcatccgtttcagtttcaagatgagcgtttaaatattttgttg
tttagttatcgtgcgcgtaattttccttataccttggacgatggcgagcaacaaaaatgg
caagcccattgtcaaaatagactacagcacggtaaaaaaggtttgttaagtgttgatgag
tttatgataaaaattgaagacttagcgcatcagcatgagcaaaaccaaccaaaaatggcc
gtgcttaaagcgttatacgaatacgtgcaaagttaa
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