Colwellia sp. PAMC 21821: A3Q33_03615
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Entry
A3Q33_03615 CDS
T04816
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q33_03615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
colw03019
]
A3Q33_03615
03009 Ribosome biogenesis [BR:
colw03009
]
A3Q33_03615
Enzymes [BR:
colw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3Q33_03615
Messenger RNA biogenesis [BR:
colw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3Q33_03615
Ribosome biogenesis [BR:
colw03009
]
Prokaryotic type
rRNA helicases
A3Q33_03615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARD46508
LinkDB
All DBs
Position
complement(862592..864394)
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AA seq
600 aa
AA seq
DB search
MTDLNNASVGFDALGLPENLVSAVKALGFTSSTPIQAQTIPPLLQGKDVLGEAQTGTGKT
AAFGLPALAKIDVTLRKPQLMVLAPTRELAIQVAEAIETFAKDMKGLKVATLYGGQSYQP
QFQQLERGAQVVVGTPGRLMDHLRRKSLKLDNLSFCVLDEADEMLNMGFLEDIEWILEHL
PKETQMALFSATMPPQIRKVANRFLKNPEHIKVAAVKKEKANITQYAWKVSGINKMTALE
RIAETVEYDAMLIFVRTRNDTIDVAEKLERAGYASVALNGDMNQAQRERTVDQLKSGVSS
ILVATDVVARGLDIPRLSLVINYDLPGDNEAYVHRIGRTGRAGRSGTAISFVRPREMYSL
RHYERLTSGTIAMYDLPNIQEIGKARIERTCTELASIVADKELTAMREIIETMASESELS
MTDLAAALLYQKQLKQPLQPKEDPKPRRDARERNDRDSSGRNDARGGRNDSRGGRNEARG
GRPDSRNEGRAERAPRKAKVARSDVDWQTYRLEVGKEHGARPGDIVGAIANEISLDSSYI
GAINLHDKHSFVQLPKGMPEKSFTQLKRVQVRRQALAITVSDVQPAAERPARPRKEQRTN
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcttaacaatgcctctgtaggctttgacgcccttggtttgcctgaaaactta
gtatctgctgtaaaagcactaggttttacatcatctacaccaatccaagcgcaaacaatt
ccccctttacttcaaggtaaagacgttcttggtgaagcacaaaccggcacaggtaaaact
gctgcctttggtctgcctgcactagcaaaaattgatgtgacgcttcgtaagccacaatta
atggtgctagcgccaacacgtgaattagccattcaagtagcagaagcgattgaaactttt
gcaaaagacatgaaaggtttaaaagtagccactttatacggtggtcaatcttaccaacca
caatttcaacaactagaacgtggtgcacaagttgttgttggtacacctggtcgtttaatg
gatcacttacgtcgtaagagccttaaattagataacttatcattttgtgtgcttgatgaa
gctgatgaaatgttaaacatgggctttttagaagacattgagtggatccttgagcatcta
cctaaagaaacacaaatggcgttgttctctgcaaccatgccaccgcaaattcgcaaagta
gcgaatcgctttttgaaaaatcctgagcatattaaagttgctgcagtgaaaaaagaaaaa
gccaatattacacaatacgcttggaaagttagcggcattaacaaaatgacagctttagag
cgtattgctgaaactgttgaatacgatgcaatgctcatctttgtacgtactcgtaatgat
actattgacgttgctgaaaaattagaacgtgcaggctatgcctctgttgccctaaacggc
gatatgaaccaagcacagcgtgaacgtactgttgaccaacttaaatcaggtgtttcatca
attcttgtagcgactgatgttgttgctcgtggtcttgatattccacgcctttcattagtt
attaactatgatttaccaggtgacaacgaagcttacgttcaccgtataggtcgtacaggc
cgtgctggtcgtagtggtacagcgatttcatttgttcgtccacgtgaaatgtattcttta
cgtcattatgagcgtttaacctctggcacgattgcgatgtacgacttgcctaatattcaa
gaaattggtaaagcccgtatcgagcgtacttgtactgagttagcgtctattgttgctgat
aaagaattaaccgcaatgcgtgaaattattgaaacaatggcgagtgagtcagaactttca
atgacagatttagcggcagcgttactttatcaaaaacagttaaagcaaccattacaaccg
aaagaagatcctaagcctcgtcgtgatgcacgtgaaagaaatgatcgtgatagcagtggt
cgcaatgatgcacgtggtggtcgtaacgatagtcgtggcggtcgcaatgaagctcgcggt
ggtcgtcctgatagtcgtaatgaaggtcgtgcagagcgcgctcctcgtaaagcgaaagtg
gcacgttcagacgttgattggcagacttaccgcttagaagtaggtaaagagcatggtgca
cgtcctggtgatatcgttggcgcaattgctaatgaaatatctttggacagtagctacatc
ggtgctattaacttacacgacaagcatagttttgtgcagttacctaaaggtatgcctgaa
aagtcttttacacagttaaagcgtgttcaagttcgtcgtcaagcactcgctattacggta
tcagatgtacagccagcagctgagcgtccagcacgcccacgcaaagagcaacgcactaac
taa
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