Colwellia sp. PAMC 21821: A3Q33_04520
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Entry
A3Q33_04520 CDS
T04816
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10943
two-component system, response regulator FlrC
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw02020
Two-component system
colw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
A3Q33_04520
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A3Q33_04520
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
colw02022
]
A3Q33_04520
02035 Bacterial motility proteins [BR:
colw02035
]
A3Q33_04520
Two-component system [BR:
colw02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
A3Q33_04520
Bacterial motility proteins [BR:
colw02035
]
Flagellar system
Flagellar assembly proteins
Others
A3Q33_04520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_2
AAA_5
HTH_30
FleQ
Mg_chelatase
HTH_24
MerR
AAA
AAA_16
HTH_23
HTH_20
HTH_28
MCM
HTH_11
Sigma70_r4_2
AAA_7
HTH_Tnp_ISL3
HTH_AsnC-type
DUF2089
nSTAND3
AAA_19
AbiEi_4
AAA_3
Motif
Other DBs
NCBI-ProteinID:
ARD43634
LinkDB
All DBs
Position
complement(1084784..1086124)
Genome browser
AA seq
446 aa
AA seq
DB search
MSTSKIMVVEDDAGLREALVDTLLLAGYQCLAVDSGEDALIKLKSHSVDLVVSDVQMGGM
SGLSLLKSIRSNYPKLPVLIMTAYGTIDDAVQAMRDGACNYMAKPFAQEVLLNMVSQYVP
LQANDGCDPVVADAQSLELLKLAKKVANTEASVMVLGPSGSGKEVLAQYIHNYSPRSQAP
FVAINCAAIPENMLEATLFGYEKGAFTGAIQASPGKFEQAQGGTILLDEITEMDLGLQAK
ILRVLQEREVERIGGRKTINLDVRVIATSNRDLKDAVQEGIFREDLYYRLNVFPLTWLPL
NERRDDILPLATHLISRICQKDGNVIPEFTVAARSKLLAYDWPGNVRELDNVIQRALILQ
SDRCIDANDLLIDNFETPQVKNESAESAKADKLGSELKLQEHQIILDTLHACRGSRKDVA
ERLGISPRTLRYKIARMRDSGIQIPI
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaagtaaaatcatggttgtcgaagacgacgctggacttagagaagcacttgtt
gatactttgctactagcgggctatcaatgtttggcagtagactcaggcgaagacgcgctg
ataaaactcaaatcgcattcggtcgacttagtggttagtgatgtacaaatgggtggtatg
tctggactatcgctattaaaaagtattcgtagtaattatcccaaactaccggtattgatc
atgacagcgtatggcaccattgatgacgctgtacaagctatgcgagacggtgcctgtaat
tatatggcgaaaccttttgcgcaagaagtgttattaaatatggtgagtcagtatgtaccg
ctacaagcaaatgacggttgcgatcctgttgtggcagacgctcaaagtcttgagttactt
aaactagccaaaaaagtggccaatactgaagcttctgttatggttttagggccaagtggc
tcaggtaaagaagtgttagctcaatatattcacaattactcaccacgaagccaagctcct
tttgtcgcgattaattgtgcagctattcctgaaaatatgcttgaagcgactttatttggc
tatgaaaaaggtgcctttactggcgcaattcaagccagtccaggtaaattcgaacaagca
caaggcggcactattttactggatgaaattaccgaaatggatttaggcttgcaagcaaaa
atattgcgagttttacaagagcgagaagtagaacgcatcggtggccgtaaaacgattaac
ctagatgttagggtaattgccaccagtaaccgcgatctaaaagatgccgtgcaagaaggc
atttttagagaagatttatactatcgtctcaatgtattcccattaacatggttgccactt
aatgaacgccgagatgatattctgccattggctacacatttaatttcgcgtatttgtcaa
aaagatggcaatgttattcctgaattcactgttgctgcgcgcagtaaattattggcttac
gactggcctggtaatgtgcgtgaattagataacgttattcagcgagcattaattctacaa
agcgatcgttgtatcgatgcgaatgatttattaattgataatttcgaaacgcctcaggtt
aaaaatgagtcagctgaatcagcaaaagctgacaaactcggcagtgaacttaaattgcaa
gagcatcaaataatattagacacattacatgcttgtcgaggcagtcgcaaagatgttgct
gagcgtttagggatcagtccacgcaccttacgttataaaattgctcgaatgcgtgacagc
ggtattcaaatcccaatttaa
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