Colwellia sp. PAMC 21821: A3Q33_06310
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Entry
A3Q33_06310 CDS
T04816
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q33_06310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
colw03019
]
A3Q33_06310
03016 Transfer RNA biogenesis [BR:
colw03016
]
A3Q33_06310
Enzymes [BR:
colw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A3Q33_06310
Messenger RNA biogenesis [BR:
colw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A3Q33_06310
Transfer RNA biogenesis [BR:
colw03016
]
Prokaryotic type
tRNA degradation factors
A3Q33_06310
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
ARD43962
LinkDB
All DBs
Position
complement(1503675..1506140)
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AA seq
821 aa
AA seq
DB search
MTNKDPHKQREADKYDKPVASRELLLSLIEKSNIPPTFKALIKQLQYTDEDMVVGVKHRL
RAMENSGQIVFNKFKQYAVANRSDVLTGKVIGHRDGFGFFAPDDGDKDFYISSYEMKRVI
HGDIVEAILIDRTDRKGRKEVKILDVIKPRTAGVVGRFYVDHHIASVVPDDARIQQEILI
QPDKKLGARHGEVVVVHVIQRPTKRSNAVGEVIEVLGEHMAPGMEIEIALREHDLPNQFS
PEVIAEVSGIADEVEESAKAPRKDLRDLPLVTIDGEDARDFDDAVYCKPNAGGGWTLWVA
IADVSYYVRDKTALDEEAISRGNSVYFPSQVIPMLPEKLSNGLCSLNPDVDRLCMVCEMD
ISALGELSGSKFYSAVMRSHARFTYSKVATILGVNPEQKDEDYRAELRTQYQALIPDLEN
LNTMYHVLSKARTERGAIAFETTESQFLFNSDRKIESIVAMVRNDAHKIIEECMILANVA
TAEFIEKHKKPGLFRVHDKPSEDKYNNFISYVNELGLDLSSMGERKTQPEPKDYCHILEK
IADRPDQELIQTMLLRSMRQAVYQSDNIGHFGLALPSYSHFTSPIRRYPDLVVHRVIKAI
LDEQAKDEANAGAHSYTPEAVIELGEHCSMTERRADDATRDVSDWLKCEYMQDHVGDTFT
GVISTVTNFGLFVRLADLHIEGLVHITSLGHDYYHFDDVRMCLTGENTGAKYHIGDTVEV
QVAAVNLDEKKIDLALAGANAVIKRAKPTTKSRSSDKHKRGKRSAGKSTSQDAKASFDEK
AKPSKKPVKAADKASDKTTTKAKKRKARKKRPGKNARKTGV
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaataaagacccgcacaaacagcgtgaagctgacaaatatgataaacccgtagca
agccgtgagctgctattgtcgctgatcgaaaaatctaacatcccgcctacgtttaaagcc
cttatcaagcaattacaatatactgatgaagatatggtggttggggtaaaacaccgttta
cgtgccatggaaaatagtggccaaattgtgtttaataagtttaagcaatatgctgtcgca
aaccgtagtgatgtgttaaccggtaaagtcatcggtcatcgtgatggttttggcttcttt
gcgccagacgatggtgacaaagacttctatatatcatcttatgaaatgaaacgtgtaatc
cacggtgatattgtagaagcgatattgatagaccgcacagaccgaaaaggtcgcaaagaa
gtaaaaatactcgacgtaattaaaccacgtactgccggggttgttgggcggttttatgtt
gatcatcatatcgcttctgttgtccctgatgatgcgcgtattcagcaagaaattcttatc
cagccggataaaaaattaggcgctcgtcatggcgaagttgtagttgttcatgttattcaa
agaccgactaagcgttcaaatgcggtgggtgaagttattgaagtgctcggtgaacacatg
gcgccggggatggaaattgaaatagccttgcgtgaacatgatcttccaaatcaattttcg
ccagaagttattgccgaagttagcggtattgctgatgaagttgaagaatcagcaaaagca
ccaagaaaagatttacgcgatttacctttagtcaccattgatggcgaagatgcacgagat
tttgacgatgcggtatattgtaaacctaatgctggcggcggttggaccttatgggtggcg
attgctgatgtgagttattacgtgcgtgataaaaccgcattagatgaagaagcaatctct
cgtggtaattcagtttattttcctagccaagttattcctatgttaccggaaaaactctcc
aatggcctgtgttcattaaacccagatgttgaccgactttgtatggtttgcgaaatggac
atttctgctttaggagaattatcaggatcgaaattttattctgccgtaatgcgctcccac
gcgcgttttacttatagcaaagtcgcgactattttaggtgtaaaccctgagcaaaaagac
gaagactaccgcgcagaattacgcacacaatatcaagcactgattcctgatttagaaaac
ctaaataccatgtatcacgtgctaagcaaggcaagaacagaacgtggtgctattgctttt
gaaacgacagagtcgcagtttctttttaacagtgatagaaaaatagagtctatcgtggca
atggtgcgcaacgacgcgcataaaatcattgaagaatgtatgattttagctaacgttgcg
acagcagagttcattgaaaaacataaaaagcccggtttatttcgtgtgcacgataagcca
agtgaagacaaatataataactttatcagttatgttaacgagcttggacttgacctatct
tccatgggagaacgtaaaacacagcctgagccgaaagactattgtcatatattagagaaa
attgccgaccgtccggatcaagagcttattcaaaccatgctgttgcgttctatgcgccaa
gcggtttatcaaagcgacaatatcggccactttggcctagcactgccatcatatagccac
tttacttcgcccatacgtcgttacccagatctagtggtacatcgtgttattaaagctatt
ttagatgagcaagctaaagatgaagcgaatgcaggcgcacatagctatacacctgaagcg
gtgatagagcttggtgaacattgctctatgaccgaacgtcgtgctgacgatgccacgcgt
gatgtctcagattggctgaaatgtgaatatatgcaagaccatgttggtgatacttttacc
ggtgtcatatccacggtgaccaactttggtttatttgtgcgtttagctgatttacacatt
gaagggttagtgcatataacctcattaggtcatgactattaccactttgacgatgtgcgc
atgtgcttaacaggtgaaaacaccggtgctaagtatcacattggcgatacggtagaagtg
caagttgctgcggttaatcttgatgagaaaaaaattgatttagcattagccggtgcaaat
gccgttataaagcgtgctaaaccaacgacaaaaagcagaagctcggataagcataaacgc
ggtaagcgctctgctggcaagtcaacatcacaagacgcaaaagcaagttttgatgaaaaa
gctaaaccaagtaaaaagccggttaaagctgccgataaagctagcgataaaacaacgact
aaagcgaaaaagcgtaaggcgagaaaaaagcgtcctggtaaaaatgcacgtaaaacaggt
gtttaa
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