Colwellia sp. PAMC 21821: A3Q33_07175
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Entry
A3Q33_07175 CDS
T04816
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A3Q33_07175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
colw03021
]
A3Q33_07175
03400 DNA repair and recombination proteins [BR:
colw03400
]
A3Q33_07175
Enzymes [BR:
colw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A3Q33_07175
Transcription machinery [BR:
colw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A3Q33_07175
DNA repair and recombination proteins [BR:
colw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A3Q33_07175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ARD44118
LinkDB
All DBs
Position
complement(1698235..1702440)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLKFLKQQNQTEEFDGIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEPGMTTLEKSQILTEEEYLDALEEHGDEFDALM
GAEAVLALLQQIDLDGEVAQMREELPEIGSETKRKKITKRLKLMEAFAASGNKPEWMIMN
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKLVEREGAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQMEA
RTLMMSTNNVLSPANGDPIIVPSQDVVLGLYYLTRDRVNGLGEGMIFTDIKEAEKAYRTG
FAELHARVKIRITEHVRNAEGVLEPITKLRDTTVGRAILWQVCPDGMPYDLIDQPLGKKP
ISKLINHAYRNLGLKDTVIFADQIMYTGFHYAMIAGASVGIDDMVIPAAKYTIIEDSEEE
VKEIQTQFEQGLVTQGEKYNKVIDIWSSANEKISKAMMDNLSKETVINRDGEPEEQDSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTLDGLQMTPLIEGGDVVEPLRERVL
GRVVAEDVVKPGTDEVLLPRNTLIDEALCDFIEENSIDQMKVRSIITCKTDFGICAHCYG
RDLARGHMINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNTGTLKL
QNAKFVTNSADHLVITSRSSELTVIDELGREKERYKVPYGTILNKKDGEAITAGDIIANW
DPHTHPIITEVGGKVQFVELIDGVTMVRQTDELTGLSSIVVTEAGQRNTAGKEMRPAVKL
VDAKGNDVMIAGTEIPAQYFLPGNAIINLEDGAEVGIGDALARIPQASSKTRDITGGLPR
VADLFEARKPKLPAILAEKTGIIAFGKETKGKVRLLITQPSGEVYEEMIPKMRQLNVFEG
ESVLKGEVIADGPESPHDILRLRGVAPVANYIVNEVQEVYRLQGVKINDKHIEVIVRQMI
RKCEILDAGDSNFLKGEILEVARVNISNRELEAEGKQPAEYEMQMMGITKASLATESFIS
AASFQETTRVLTEAAVAGKKDKLRGLKENVIVGRLIPAGTGYSYHQERARAKNAVPVEEV
TVSADDAAQALTDALNADLSS
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacaaaatcaaacagaagagttcgatggaatt
cgcatcgggctagcttcacctgacatgattcgttcatggtcatttggtgaagtaaagaaa
cctgagacgattaactatcgtacttttaagccggaacgagatggtttgttctgtgcgcgt
atatttggtccagttaaagactacgaatgtctttgtggcaaatacaaacgccttaagcat
cgtggtgtaatttgtgaaaaatgtggcgttgaagttacattaactaaagttcgtcgtgac
cgtatgggtcatatcgaattagcaagcccagttgctcacatttggttcttaaagtcattg
ccatcacgtatcggtctattattagacatgacgttacgtgatatagagcgtgtactttac
tttgaatcttatgttgttaccgaacctggtatgacgacattagaaaaaagccaaattcta
actgaagaagaatatcttgatgcgttagaagagcacggtgacgaattcgacgcccttatg
ggtgctgaagcggtacttgcgttattacaacagattgatcttgatggcgaagtagcgcaa
atgcgtgaagaattgcctgagattggttctgaaactaagcgtaaaaaaatcactaaacgt
ttaaaattaatggaagcattcgcagcatcaggtaacaaacctgagtggatgatcatgaac
gttttaccaattttaccaccagacttacgtccgttggtacctttggatggtggccgtttc
gcaacgtctgacttaaacgatttataccgtcgtgtaattaaccgtaacaaccgtttaaaa
cgtcttcttgacctagtagcaccagatatcatcgtacgtaacgaaaagcgtatgttgcaa
gagtctgttgatgcattgctagataatggtcgtcgtggtcgcgcaattactggttctaac
aaacgtcctcttaaatcacttgccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttactaggtaaacgtgtagattactctggtcgttctgtaattactgttggtcctaca
ttacgtttgcatcaatgtggtttaccgaaaaaaatggcactagaattattcaagccattt
atttacggtaaattagaagcgcgtggattagccacaacaatcaaagctgctaagaaattg
gtagagcgcgaaggcgctgaagtttgggatgtacttgacgaagtaattcgtgaacatccg
gttatgcttaaccgtgcaccaacacttcatagattgggtatccaagcgtttgaacctgta
ttgattgaaggtaaagcgattcatttgcatccgttggtttgtgcggcatataacgccgat
ttcgatggtgaccaaatggcggtacacgtaccgttgacaatcgaagcacaaatggaagca
cgtacgttgatgatgtcaacgaataacgtactttctccagcgaacggtgaccctatcatc
gtaccatcacaggatgttgtattaggtttatattacctaacacgcgatcgtgtaaatggt
ttaggtgaaggtatgatttttaccgacatcaaagaagctgaaaaagcataccgtacaggt
tttgctgaacttcatgcgcgtgtaaaaattcgtattactgaacatgtgcgtaatgctgaa
ggtgtacttgagcctattactaagcttcgcgatacgactgttggtcgtgcgatcttatgg
caagtatgtccagatggcatgccttatgatcttattgatcagccactaggtaaaaagcca
atttcaaaactgattaaccatgcgtaccgtaacttaggtcttaaagatactgttatcttt
gctgaccaaattatgtacacaggtttccactacgcgatgatcgcgggtgcttcagttggt
atcgacgatatggttattccagcggcgaaatacaccatcatcgaagattcagaagaagaa
gttaaagaaattcaaactcagttcgagcaaggtcttgtaactcagggtgaaaaatacaac
aaagttattgatatttggtcttctgccaacgagaaaatctcgaaagcgatgatggacaac
ttatcaaaagaaacagtaataaaccgtgatggtgagccagaagagcaagactctttcaac
tcaatctacatgatggcggattctggtgctcgtggtagtgccgctcagattcgtcagctt
gcaggtatgcgtggtttgatggctaaaccagatggctcaatcatcgaaacaccaatcacc
gctaacttccgtgaaggtttgaacgtattacaatacttcatctctactcatggtgcgcgt
aaaggtttggctgatacggcattgaaaacagctaactcgggttacttaactcgtcgttta
gttgatgttgcacaagatttggttgttaccgaacatgattgtggcacattagacggtcta
caaatgacaccattgattgaaggtggtgatgttgttgagccgttacgtgaacgtgttctt
ggtcgtgttgtagctgaagatgttgttaaacctggtactgatgaagtgttattacctcgt
aatacacttattgacgaagctttatgtgatttcattgaagaaaactcaattgatcaaatg
aaagttcgttcaatcattacttgtaaaacagattttggtatttgtgctcattgttacggt
cgtgatttggctcgtggtcatatgattaaccaaggtgaagcgattggtgttgtggcagca
caatctatcggtgaacctggtactcagttaaccatgcgtacgttccatatcggtggtgct
gcatctcgtgcatctgctgaaaacaacgtacaagttaagaacacaggtacactgaaacta
caaaacgctaagtttgtaactaactcagcagatcacttagtgattacttcacgttcatct
gaactgacagtaattgatgagcttggtcgtgagaaagaacgttacaaagtaccttacggt
actatcttgaataagaaagatggcgaagcaattaccgcaggcgacatcattgctaattgg
gacccgcatacgcatccaattattactgaggttggtggtaaggttcaattcgttgagctt
atcgatggcgtaactatggttcgtcaaactgatgaacttactggtttatcaagtattgtc
gtgactgaagctggtcaacgtaacactgcaggtaaagaaatgcgcccagcggttaagtta
gttgatgctaaaggtaatgatgtaatgatcgctggtactgaaattccagcacagtacttc
ttaccaggtaacgcgattattaaccttgaagatggtgcagaagttggtattggtgatgcg
ttagcgcgtattccacaagcatcgtcaaaaactcgtgatattaccggtggtttaccacgt
gttgccgatttatttgaagcacgtaaacctaagcttccagctatcttagctgagaaaaca
ggtattatcgctttcggtaaagagactaaaggtaaagtgcgtttacttatcactcaacca
agtggtgaagtatacgaagagatgatccctaaaatgcgtcaattaaacgtgtttgaaggt
gaatctgtacttaaaggtgaagttattgccgatggtccagagtctccacacgatatctta
cgtttacgtggtgttgcaccagtggctaactacattgttaacgaagtacaagaagtatac
cgtttacaaggtgttaagattaacgataagcacatcgaagttatcgtacgtcaaatgatc
cgcaagtgtgagatcttagatgccggtgatagtaatttccttaaaggtgaaatcctggaa
gttgcgcgtgtaaacatctctaatcgtgagttagaagctgaaggcaagcaaccagctgaa
tacgaaatgcaaatgatgggtattactaaagcatcattagcaactgagtcattcatctcg
gctgcatctttccaagaaacgacacgtgtacttactgaagcagcagtagctggtaagaaa
gacaaacttcgtggcttgaaagagaatgttattgttggtcgcttaatcccagcaggtaca
ggttactcttaccatcaagaacgcgcgcgtgctaaaaacgccgttccggtagaagaagta
acagtatcagctgacgacgcagcgcaagcattaacagatgctttaaatgcagatttatct
tcatag
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