Colwellia sp. PAMC 21821: A3Q33_07180
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Entry
A3Q33_07180 CDS
T04816
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A3Q33_07180 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
colw03021
]
A3Q33_07180 (rpoB)
03400 DNA repair and recombination proteins [BR:
colw03400
]
A3Q33_07180 (rpoB)
Enzymes [BR:
colw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A3Q33_07180 (rpoB)
Transcription machinery [BR:
colw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A3Q33_07180 (rpoB)
DNA repair and recombination proteins [BR:
colw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A3Q33_07180 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ARD44119
LinkDB
All DBs
Position
complement(1702547..1706575)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKSVQVMDYPFLLSIQLESFRKFIDIDPTGETGLEAAFHSIFPIK
AYSGSSELQFVSYRLGEPLFDVKECQIRGITYSAPLRVKLRLVVYDKEAAAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALEYSTEEILDIFYDTTNFTIKGDKLIMD
LIPERLRGETATFDIKLPKGDVLVEQGRRITARHIRSLSKEKMKILEVPAEYIVGKVLSK
AYIDESTGEVIAEANAEITLELLAELSQAGHKVLSTLYMNEFDVGSYMSDTLRVDNSTNR
LEALVEIYRMMRPGEPPTKDAADTLFNNLFFALERYDLSTVGRMKFNRRVGNADDVGTGV
LSKEDIISVMKTLIGIRDGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSCYARTNDFGFLETPYRKIVDGLV
TDDIDYLSAIEEGNFVIAQTTAAVDADGKLVEGLVACRHKNEFTLMSAEQVQYMDVSPQQ
IVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRVDKPLVGTGMEKIVAVDSGVTVVAK
RGGVVTYVDASRIVVKVNENEMHAGEAGIDIYNLTKYTRSNQNTCINQRPLCRMAEPVVR
GDVLADGPSTDMGELALGQNMRIAFMPWNGYNFEDSMLLSERVATEDRFTTIHIQELTCI
ARDTKLGSEEITADIPNVGESALSKLDEAGVVYIGAEVNGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKAADVKDSSLRVPNSVSGTIIDVQIFTRDGVEKDARAVEIEEMQLKQVKKD
LGDEFSILEDGIYARAKKLLLASGLNESDLNSMSRDKWLVQNLADEGQQSELEQIAEQYD
NIKADFDKKYEVKRRKITQGADLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISNV
VPVEDMPYDEHGVPVDVVLNPLGVPSRMNIGQILETHLGMAARGIGEKINRMLEAQLEIH
KLREFLKEVYNLGESRQEVDIDSFSDDEIMRLAGNLRAGLPIATPVFDGASEKEIKDLFK
LADMPESGQFTLTDGRTGRNFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNLVDGDHRMEPGIP
ESFNVLLKEIRSLGINIELDQD
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttactctgaaaagaaacgtattcgtaaggactttggtaaaagtgtgcaa
gtaatggactatccattcttgttatcaatccaactcgaatctttccgtaagtttattgat
attgatccaacaggtgaaacaggcctagaggctgcatttcattctatttttccaattaaa
gcttattctggtagctcagaattacaattcgtaagctatcgtttgggcgagccgttattt
gatgttaaagaatgtcaaatccgcggtatcacctactctgcgccattacgcgttaaatta
cgtttagtcgtttatgataaagaagcggcggcaggcacagtaaaagatatcaaagaacaa
gaagtatacatgggtgaaataccattaatgactgacaacggtacgtttgtcatcaatggt
actgagcgtgttattgtttctcaattacaccgttctccaggtgtgtttttcgatcatgat
aaagggaaaacgcattcttcaggtaaagtgttatataacgctcgcgttataccttaccgt
ggttcatggttagatttcgaatttgatccaaaagataacttatttgttcgaattgaccgt
cgtcgtaaattaccggcgtcaatcattttgcgtgccttagagtactcaactgaagaaatt
ttagatatcttctacgatacgactaattttacgattaaaggcgataagctaataatggat
ttaattccagaacgcttacgtggtgaaacagctactttcgacataaaactccctaaaggt
gatgttttagttgaacagggtcgtcgtattaccgcacgtcatattcgctctttatcaaaa
gagaaaatgaaaattttagaagtacctgcagagtatattgtaggtaaagtactatctaaa
gcatacattgatgagtctactggtgaagtaatcgctgaagcgaatgctgagattacgcta
gaattactagctgaattaagccaagcgggacacaaagtactctctactttatatatgaac
gaattcgatgttggttcatatatgtcagacacacttcgcgtagataactcaactaaccgc
ttagaagcactagttgaaatttaccgtatgatgcgtcctggcgagccaccgacaaaagat
gcagctgatacgttatttaataacttatttttcgcactagaacgttatgacctatcaaca
gttggtcgtatgaagttcaaccgtcgtgttggcaatgctgatgatgtcggtactggtgta
ttatctaaagaagatatcatttcagtaatgaaaactttgatcggcattcgtgacggtaaa
ggtgaagttgatgatatcgatcacttaggtaaccgtcgtatccgttctgttggtgaaatg
gcagaaaaccaattccgtgttggtttagtacgtgttgagcgtgctgttcgtgaacgttta
agtcttggtgacttagatgcgatcatgccacaagatttaattaacgctaagccgatttct
gctgccgttaaagaattctttggttcatcacaattgtcacaatttatggatcaaaacaac
ccattgtcagaagtgacgcataagcgtcgtatctctgctttagggccaggtggtttgaca
cgtgaacgtgcaggttttgaagtacgtgatgtacatccaacgcattatggtcgtgtttgt
ccaattgaaacgccggaaggtccaaacattggtttgatcaactcgttatcgtgttatgca
cgtactaacgatttcggtttcttggaaactccttaccgtaaaattgttgatggtttagtg
acagatgacatagattacctttctgcaattgaagaaggtaatttcgttattgcacaaact
acagctgcagttgatgccgatggtaaattggttgaaggcttagttgcttgtcgtcataaa
aacgaatttacactaatgtctgctgaacaagttcagtatatggatgtttcaccacaacaa
atcgtttcagtagcggcatcacttattccgttcctagaacacgatgatgctaaccgggcc
ttgatgggctcgaacatgcaacgtcaagctgtacctacattaagagtggataaaccactt
gttggtacgggtatggagaaaattgttgcggttgattctggtgtaacagttgttgctaaa
cgtggcggtgttgttacttacgttgatgcttcacgtatcgtcgttaaagttaatgaaaat
gaaatgcacgctggtgaagcgggtattgatatttataacttaactaaatacacccgttca
aaccaaaatacttgtatcaaccaacgtccattgtgtcgtatggctgagcctgtagttcgt
ggtgatgttttagcagatggtccttctacagatatgggtgaattggcacttggccaaaac
atgcgtatcgctttcatgccttggaatggttacaactttgaagattcaatgttgttatct
gagcgtgtagctacagaagatcgtttcactacgattcatattcaagaattaacttgtatc
gctcgtgatactaaacttggcagtgaagaaattactgctgatattccaaatgttggcgaa
tctgcattatctaaattagatgaagcgggtgttgtttacattggagctgaagttaatggt
ggcgacatcttagtgggtaaagttactcctaaaggtgaaacacaattaacaccagaagaa
aaacttttacgtgcaatctttggtgaaaaagccgctgatgttaaagacagctctttacgt
gtccctaactcagtgtctggtactatcatcgatgtacaaatcttcacccgtgacggtgta
gaaaaagatgctcgtgctgttgaaatcgaagaaatgcaacttaaacaagttaagaaagac
ttgggtgatgagttcagtattttagaagatggtatatacgctcgtgcgaagaaattgtta
ttagcgtcaggtttaaatgaatctgatctaaacagtatgtctcgtgataagtggttagtt
caaaacttggctgatgaaggtcaacagtcagagcttgaacaaatcgctgaacaatacgac
aacattaaagcagactttgataagaagtatgaagttaagcgtcgtaaaatcactcaaggt
gctgatttagcgccaggcgtattgaaaatagttaaagtttacttagctgttaaacgtcgt
atccagccaggtgataaaatggccggtcgtcatggtaacaaaggtgttatttcaaacgta
gtacctgttgaagacatgccttacgatgagcacggtgttccagttgatgttgtacttaac
ccgttgggtgtaccatcacgaatgaacattggtcagatcctagaaacacatttaggtatg
gcagcgcgtggtattggtgagaaaattaaccgtatgttggaagctcaattagaaattcac
aaattacgtgaattcttaaaagaagtttacaacttaggtgagtctcgccaagaagttgat
attgattcattctctgatgatgaaattatgcgcttagcaggtaacttacgtgcaggtctt
ccaattgctactccagtatttgatggtgcaagtgagaaagagattaaagacttatttaaa
cttgctgatatgcctgaaagtggtcaatttacgcttactgatggccgtactggtcgtaac
tttgagcgtcctgtgactgttggttacatgtatatgttgaaactgaaccatttagttgat
gacaaaatgcatgcgcgttctacgggttcatactcgctagtaacgcaacagcctcttggt
ggtaaagcacagtttggtggtcagcgtttcggtgagatggaagtatgggcacttgaagca
tacggtgccgcttataccttgcaagaaatgctaacggttaaatctgatgatgttaacggt
cgtactaagatgtataaaaacttagttgacggtgatcatcgtatggaaccgggcatccct
gaatcattcaacgtattgttgaaagaaattcgttcgttgggtatcaacatcgaattagat
caggactag
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integrated database retrieval system
