Colwellia sp. PAMC 21821: A3Q33_07810
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Entry
A3Q33_07810 CDS
T04816
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q33_07810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
colw03019
]
A3Q33_07810
03400 DNA repair and recombination proteins [BR:
colw03400
]
A3Q33_07810
Enzymes [BR:
colw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A3Q33_07810
Messenger RNA biogenesis [BR:
colw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3Q33_07810
DNA repair and recombination proteins [BR:
colw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A3Q33_07810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ARD46575
LinkDB
All DBs
Position
complement(1850531..1852333)
Genome browser
AA seq
600 aa
AA seq
DB search
MLQAISPTTLTESLKHHFGYQAFRPGQEEIINHALQGRDSLVLMPTGGGKSMCFQLPATL
MPGVTIVVSPLIALMKDQVDGLVRQGISAAYVNSSLDTETINDIFRRLGQGEIKLLYVAP
ERLKNYYFIQGLSQLTISLFAIDEAHCISQWGHDFRPAYTQLHQLKQKFPHVPVMALTAT
ADVTTRRDILQQLALHDPYIHLDSFDRPNIRFTLAEKYQGEQQVIGYIKKRKDECGIIYC
NSRWQVEKLAKRLAETGINCSAYHAGLESEIRNIIQDKFAKDDVQIVVATVAFGLGINKS
NVRFVIHYEPPRTLESYYQEIGRAGRDGLPAEALFLYDEKDAERISKRIGEGENEQRVNV
ELQRFQAMRGFIDAQTCRRRVVLNYFAEFTEKSCGNCDICLDPPSQFDATEAAQKVLSCV
YRIEGNGDVEHVVAVLRAELNDKIIQLAHDKVSTFGIGRDKTPGYWFSIVRQLIHLGYLQ
QDIAAQSNLCLTQAAGAVLKGQEPLMLAAPRLQKASYWQRNKREKVYDRILFSKLRSLRK
EIASLEDIAPFIVFNDATLAELARVKPLTSRQMLNVSGIGDTKLARYGEPFLSLIKQHQS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
ctgttgcaagccatttcccctacaacattaactgaatccctgaaacatcattttggttat
caggcgtttcgccctggccaagaagaaattatcaatcatgcacttcaaggccgcgacagc
ttagtgttaatgccaacaggcggcggaaagtcaatgtgctttcaattgccagcaaccttg
atgcctggtgttaccattgttgtttcaccattaatagcattaatgaaagatcaagttgat
ggtttagttcggcaaggtatttcagctgcttatgttaattcgtctctagataccgagacc
atcaacgatatttttaggcgtttaggtcaaggcgaaataaagctactttatgtcgcacca
gagcgattaaagaattattattttatccaagggttatctcaattaacaatcagtcttttt
gctattgatgaagcgcattgtatatcgcaatggggccatgattttcgccctgcatacacg
caattacatcagctaaaacaaaaatttccccatgtacctgtaatggcattaaccgcaacg
gctgatgtcaccactcgtcgagatattctgcaacaattagctttacatgacccctatata
caccttgatagctttgatcggcccaatattcgttttactttggcagagaaatatcagggt
gagcaacaagttattggttatatcaaaaagcgaaaagatgagtgcgggattatttattgt
aatagtcgctggcaagttgaaaaactagcaaaacgattagcagaaacaggcattaattgt
tcggcttatcatgctgggctagagtctgaaattcgcaatattatccaagataaatttgcc
aaagatgatgtgcaaattgtagtggctacggtggcttttggtttgggtattaataagtct
aatgtgcgatttgttatacattatgagccaccacgaacattagagtcttactatcaagaa
ataggtcgagcaggccgagatggcttaccggcagaagcactttttctttatgatgagaaa
gacgctgagcgcataagtaagcgtattggtgaaggtgaaaacgagcagcgagtcaatgta
gaattacagcgttttcaggcgatgcgtggctttattgatgctcaaacttgccggcgtaga
gtggtcttaaattactttgcggagtttaccgaaaaaagctgtggtaattgtgatatttgc
ttagatcccccgagtcaattcgatgccacagaggcggcgcaaaaagtgctgtcttgtgta
tatcgtatcgaaggaaatggtgatgttgagcatgttgtggcggttttacgagccgaactc
aatgataaaattatccaactggctcatgataaagtatcgacttttggtattggtagagat
aaaacgcctggctattggttttcaatagtgcggcaattaattcacttaggctatttacaa
caagatatcgcagcccagtcaaacttatgtttaacacaggcggcaggtgctgttttgaaa
ggacaagagccattaatgctggccgctcctcgcttacaaaaagcgagttattggcaacgt
aataaacgtgaaaaagtttatgacaggatactgttttcgaaattaagatcattacgaaaa
gaaatcgccagccttgaagatatagcgccgtttattgtttttaacgatgctaccttagct
gaattagcacgagtaaaaccattaacctcaagacaaatgcttaatgtcagtggtattggc
gataccaaacttgcccgttatggcgaaccatttttatcgttaattaagcagcatcaaagc
tga
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