Colwellia sp. PAMC 21821: A3Q33_08505
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Entry
A3Q33_08505 CDS
T04816
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q33_08505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
colw03019
]
A3Q33_08505
Enzymes [BR:
colw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3Q33_08505
Messenger RNA biogenesis [BR:
colw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3Q33_08505
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ARD44349
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All DBs
Position
2021786..2023033
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AA seq
415 aa
AA seq
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MSFSSLALDKSLTDAVKALGYDQPTPIQLQAIPAILANKDIMAGAQTGTGKTAAFALPIL
QRLGENIPAARPIRALVLTPTRELAQQVYKSFVSYAENTELNIAVAYGGVSIKPQIEAIE
KGADILIATPGRLLDHIVTGSVLLIHLETIVFDEADRMLDMGFKDEIDRILNRLPPKRQT
LLFSATFDDAIFKLSKTLLNDPELIEVSERNTAATKVEQIVYTVDSDRKRELTSFLIGSK
NWQQVLIFTRTKIGADELAKEMSKDGIKTQSIHGDKSQGARDKALAEFKAGKTRALVATD
VAARGIDISDLRYVINYELPYIAEDYIHRIGRTGRAGNEGLAISLMSPSETWLLEAVEKV
LDTRLMQQWLPGYEPDLTKKDAPARKNTLGQQKKHGRQKAFGDKNKAKPNKPRRR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcgtccctagcattagataaatcattaactgatgctgttaaagccttaggc
tatgatcagccaacgcctattcagctgcaggccattcctgctattttagccaataaagac
attatggcgggagcacaaactggcacaggtaaaaccgctgcgtttgctttacctattctg
caacgcttaggcgagaatattcctgctgcaagacctataagagcacttgtattaaccccg
acacgtgagctggctcagcaagtgtataaaagctttgttagttatgctgaaaacaccgag
cttaatattgccgttgcgtatggcggcgttagtattaagccgcaaattgaagccatagag
aaaggtgctgacatactcatcgccacgcctggccgtttgttagatcatatagttacaggc
agtgtgttattgattcatctcgaaactattgtgtttgatgaagccgaccgcatgttagat
atgggctttaaagatgaaatagaccgaattttaaatcggctaccgcccaagcgtcagaca
ttactgttttcagccacttttgatgatgctattttcaaactcagcaaaactttacttaat
gatcctgagcttattgaagttagtgaacgtaataccgcagctacaaaagtcgaacaaatt
gtttataccgtggacagcgatcgcaaacgcgagctaacgtcatttctaattggttctaaa
aactggcaacaagtgcttatttttactcgtacaaaaattggcgctgatgaactcgcgaaa
gaaatgtctaaagacggcattaaaactcaatcgatacatggtgataaatcacaaggtgcg
cgtgataaagccttggctgagtttaaagcgggtaaaactagggcgttggtcgccacagat
gttgccgcacgaggtatcgacattagtgatttacgttatgttattaattacgaacttccc
tatattgctgaagactacattcaccgtattggccgaacaggacgagcaggtaatgaaggt
ttagctatttctttaatgagcccgtcagaaacgtggttgttggaagcggtagaaaaagta
ttagacacacgtttaatgcaacaatggctaccaggctacgaacccgatctaaccaaaaaa
gacgcccccgcgagaaagaatacgttagggcaacaaaagaaacacggccgacaaaaagcc
tttggtgataaaaacaaggctaagcctaataagccacgtcgtcgttaa
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