Colwellia sp. PAMC 21821: A3Q33_16150
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Entry
A3Q33_16150 CDS
T04816
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw03030
DNA replication
colw03430
Mismatch repair
colw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A3Q33_16150 (dnaE)
03430 Mismatch repair
A3Q33_16150 (dnaE)
03440 Homologous recombination
A3Q33_16150 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
colw03032
]
A3Q33_16150 (dnaE)
03400 DNA repair and recombination proteins [BR:
colw03400
]
A3Q33_16150 (dnaE)
Enzymes [BR:
colw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A3Q33_16150 (dnaE)
DNA replication proteins [BR:
colw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
A3Q33_16150 (dnaE)
DNA repair and recombination proteins [BR:
colw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
A3Q33_16150 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ARD46706
LinkDB
All DBs
Position
3815918..3819427
Genome browser
AA seq
1169 aa
AA seq
DB search
MPAQSDPKFIHLRIHSDYSMSDGLKKVKPIVARVAELNMPAMALTDQTNLCGLVKYYHAA
HGAGLKPIIGCDFWVKSDALEGELSRLVVLASSNVGYKNLTELISKAYLRGHIQGKAVLD
RDWLIERAEGLILLSGGREGDVGKALLKGNREFVEEMLAFYLQYFPNCYYIELIRTNRND
EENYIHLAVELAASHDLPVVATNEVMFLSPNDFDAHEIRVAIHDGFTLDDKRRPKKYSKE
QYLRSEEEMVELFADIPEALANSVEIAKRCNVTVRLGEYVLPDFPTEGLSIEDYLVKVSE
EGLQERLEFLFDKDAPDFAEKRKPYDERLAIELKVVNNMGFPGYFLIVMEFIQWSKDNNI
PVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDRRDEVID
HVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPTPGMTLAKAFE
EEPKLPEVYAQDSDVKDLIDMCRILEGTTRNAGKHAGGVVISPTTITDFAPLYCDEEGKN
PVTQFDKNDVEDAGLVKFDFLGLRTLTILQWAIEMADEKLLKQGKEPINLAGIDLEDKAS
FKVLLKSETTAVFQLESSGMKSLIAKLKPDCFEDIIALVALFRPGPLQSGMVDNFIERKH
GREAISYPDETWQHLDLKPILEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKK
PEEMAKQRAGFEEGAIGRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKT
HFPGPFMAAVMSADMDNTEKIVTLVDECSNMGLDLLPPDVNRGQYKFTVNDEDQIIYGIG
AVKGVGEGPIEAIIAARESDGEFIDLFDFCARVDLKKINKRVLEKLIKSGAMDALGPNAK
DGPHRAALFESLPEALKAAEQHAKAQAIGQNDLFGLINEEPADNRQVYKEVAKWPEQRWL
DGEKETLGLYLTGHPINRYLSEIKRYATGRLVSLQPTNKDKTTVAVGLVLAVRVLVNKRG
RRWALVTLDDKSARMDIRLFPDDYDRFAELLISDAILVCSGQVSFDDYSGGITMTARDIM
TIADARENYVTSLDLQIDKNQLSGRFIEQFTQVLTPYKDGICPIRVFYQRDEAKGMLELG
VQWRVSPTDMLLYDLKTLLGEEQVELKFK
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgccagcccaaagtgatccgaagtttattcatttaagaatacacagcgattattcaatg
tcggacggtttaaagaaagttaagccgattgttgcccgtgttgccgaactgaatatgcct
gcgatggcattaactgaccaaacaaatttatgtggccttgttaaatattatcatgctgca
catggtgcaggtctaaagcctattattggttgcgacttctgggttaaaagtgatgcgctt
gaaggagagttgtctcgtctcgttgtcttagctagcagcaatgtagggtataaaaactta
acagaattaatttcgaaagcgtatttgcgtggtcatattcagggcaaagcggtattagat
agagactggttaattgagcgtgcagaaggcttaattttgctatctggtggccgagaaggt
gacgtaggtaaagcgctgctaaaaggtaatcgagagtttgttgaagaaatgctcgcgttt
tatctgcaatattttcctaattgttattacattgagctgatcagaaccaaccgtaatgat
gaagaaaactatattcaccttgccgttgaacttgccgcgagtcatgacctgcctgtagtt
gccaccaatgaagtgatgtttttaagtcctaatgactttgatgcccatgaaattcgtgtc
gccatacatgacggttttactttagatgataaacgccgtccgaaaaaatattctaaagaa
caatacctgcgatccgaagaggaaatggtcgagctttttgctgatattcccgaagcgctg
gctaactcagtagaaatagcaaaacgctgtaatgttaccgtccgtttaggtgaatatgta
ttacctgactttcctactgaaggtttgtcgattgaagactatttagtcaaagtatcagaa
gaaggtttacaggaaagattagaattcttattcgataaagacgcgcctgactttgccgag
aaacggaaaccttacgatgaacgtttagccattgagctcaaagttgtcaataatatgggt
ttccccggttatttcttgatcgtgatggaattcattcaatggagtaaagataataatatt
cctgtcggtcctggtcgtggttcaggggctggttcattggttgcttatgcacaaaaaatt
accgatcttgatccgctcgagtatgatttactttttgagcgatttctaaaccctgaacgt
gtttcaatgcctgatttcgatatcgatttttgtatggataggcgcgatgaggttattgat
cacgttgctgagttgtatggccgtgatgcggtatctcaaatcattacctttggtaccatg
gcggcaaaagcggtcattcgagatgtgggtcgagtactgggtcatccatatggttttgtt
gatcgtatttccaaattgatcccacccacgccgggtatgacattagcgaaagcatttgaa
gaagagccaaagttacctgaggtttatgcgcaagacagtgatgtaaaagatctgattgat
atgtgccgaattttagaaggcacaactcgaaatgccggtaaacatgctggtggtgtagtt
atatcaccgacaacaatcaccgattttgcgccgctttattgtgatgaagaagggaaaaac
ccggtaacgcaatttgataaaaatgatgttgaagatgccggcttagttaagtttgatttt
cttggtttacgtactttaacaatattgcagtgggccattgaaatggcagacgaaaaattg
ttaaaacagggtaaagaaccgatcaatttagccggaattgacctcgaagataaagccagt
tttaaagtcctattaaaatcggaaacaaccgcggttttccaacttgagtctagcggtatg
aaatcgctgatcgcaaaattaaaacctgattgctttgaagatattattgcattggtggcg
ctgtttagacctgggcctttgcaatcaggcatggttgataactttatcgaacgtaaacat
ggccgtgaagctattagttacccagatgaaacttggcaacatcttgacttaaaaccaatt
cttgaaccgacttacggtattattctttatcaagaacaggttatgcaaattgcgcaggta
ctggccggctattcattaggtggcgccgatatgttacgtcgtgccatgggtaagaaaaaa
ccagaagaaatggcaaagcagcgagcgggttttgaagaaggggcgataggtcgaggtgtt
gatggcgagctagccatgaaaatctttgatttagttgaaaagtttgcgggttatggtttt
aataaatcgcattctgccgcttatgccttagtgtcttatcaaactctgtggatgaaaact
cattttccggggccttttatggccgcggtaatgtcagctgatatggataacaccgagaaa
attgttaccttagttgacgagtgcagcaacatggggcttgatttattgccgccggatgta
aaccgtgggcaatataaattcacggttaatgatgaagaccaaattatttatggtatcggt
gctgtaaaaggcgttggtgaaggtccaattgaagcaataatcgctgcgcgtgaaagtgac
ggcgagtttattgatttatttgatttttgcgctcgggttgacttgaaaaagatcaataaa
cgggtgttagaaaaattaattaagtcgggagctatggatgcccttggacccaatgccaaa
gatggtcctcatcgtgcggctttatttgagtctttacccgaggcgttaaaagcagctgaa
caacatgctaaagcgcaagctattgggcaaaatgatttgtttggcttaataaacgaagag
ccagcagataatagacaagtttataaagaggttgctaagtggcctgaacaacgatggtta
gatggcgaaaaagaaactttaggtttatatttaacgggtcaccctataaatcgttattta
agtgaaattaaacgttatgcaacaggacgtttagtgagcttacaaccaacaaataaagat
aaaactaccgttgctgtaggtttggtacttgctgtgcgggttttagtgaataaacgtggt
cgtcgttgggcattggtaacattagacgacaaaagtgcccgaatggatattcgtttattc
ccagatgactacgataggttcgcagaattgcttatttctgatgcaattttagtctgtagc
ggacaggtcagctttgatgattactctgggggtattacaatgaccgctcgagacataatg
accattgctgatgcacgtgagaattatgtcacgtcattagatttacaaatcgataaaaat
cagctttcgggacgatttatcgagcagtttacacaggtacttacgccctataaagatggt
atttgcccaattcgtgttttttatcaaagagatgaagcgaaaggtatgctagagttaggg
gtacagtggcgcgtatcgccaaccgacatgctattatacgatttgaaaaccctattgggt
gaagagcaagtcgagttaaaatttaaatag
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