Colwellia sp. MT41: CMT41_00935
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Entry
CMT41_00935 CDS
T04159
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
com
Colwellia sp. MT41
Pathway
com03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
com00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CMT41_00935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
com03400
]
CMT41_00935
Enzymes [BR:
com01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CMT41_00935
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CMT41_00935
DNA repair and recombination proteins [BR:
com03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CMT41_00935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Ribosomal_S13
Zn_ribbon_9
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ALO33437
UniProt:
A0A0S2JBM3
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All DBs
Position
219253..220068
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AA seq
271 aa
AA seq
DB search
MPELPEVEVCRLGISPHIIAQTVSKVTIRDSRLRWPIPDEIHSVVGLQVLGVDRRAKYLL
LRFKTGTLLLHLGMSGTIRIIEHDTPIVKHDHFDLAFQHGKVLRFNDPRRFGAVLWLAND
EDKLGLLSKLGPEPLSDDFYQGYLFNKAKNRKVPIKTFLMNNHIVVGVGNIYANEALFQA
GILPTAKTGAIDEQRLDRLTNIIKKVLSAAIAQGGTTLKDFTQADGRPGYFAQSLMVYGR
AGQPCVTCQSKLQEIRQSNRSSVFCPNCQQD
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattacccgaagtcgaagtatgccgcttaggtataagccctcatattattgct
cagacagtcagtaaggtaactattcgtgatagccgcttacgttggcctatccctgatgaa
atacactctgtagtgggcttacaagtgcttggtgttgatcgccgcgctaaatacctatta
ttgcgctttaaaacaggaactttattactgcacctaggcatgtcaggtacgataaggata
attgagcatgatacccctatagttaagcatgatcattttgatctcgcttttcaacacggc
aaggtattgcgcttcaatgatcctcgacgctttggtgcggtgttatggttagcgaatgat
gaagataaactgggcttactcagtaaattggggcctgagccactcagtgatgacttttat
cagggctatttgtttaataaagctaaaaatagaaaagtccctatcaaaacctttttaatg
aataatcatatcgtggtaggcgtaggtaatatttatgccaatgaggcgctgtttcaagcc
ggtattttaccgacagccaaaacgggggctattgatgagcaaagactagaccggctaact
aatattattaaaaaagtgctcagtgcggccattgcacaaggtggcactacccttaaggac
ttcacccaagcagatggtcgtccaggttattttgcgcaatcactgatggtctatggtcgt
gccgggcaaccctgtgtgacttgtcagagtaaattacaggaaattaggcagtcgaatcgt
agctccgttttttgtcctaattgccaacaggattaa
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