Colwellia sp. MT41: CMT41_05790
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Entry
CMT41_05790 CDS
T04159
Name
(GenBank) RNA polymerase subunit sigma-70
KO
K02405
RNA polymerase sigma factor FliA
Organism
com
Colwellia sp. MT41
Pathway
com02020
Two-component system
com02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
com00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CMT41_05790
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CMT41_05790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
com03021
]
CMT41_05790
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
com02035
]
CMT41_05790
Transcription machinery [BR:
com03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CMT41_05790
Bacterial motility proteins [BR:
com02035
]
Flagellar system
Flagellar assembly proteins
Stator
CMT41_05790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
UPF0122
GerE
Motif
Other DBs
NCBI-ProteinID:
ALO34297
LinkDB
All DBs
Position
1368616..1369335
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AA seq
239 aa
AA seq
DB search
MVKANSYNSLIDKTALLEQHTVLVKRIAYHLLARLPASVLVDDLIQSGMIGLFEAAKNFD
NSKGASFETFAGIRIRGAMLDEIRRGDWTPRSVHKNSRMISEAIKQLEAQRGRDVSDIEV
AEKLDISLNDYHHILSEVSTGKILGIDDLGVNEDAIKLADSCRGDDPYHSIEHSAFKKGL
AQCISSLPEREALVLSLYYDEELNLREIGQVLDVSESRVSQIHSQAMHRLKARMHSWQS
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
gtggtaaaagcaaatagctacaatagtctaattgataaaacagctttgcttgaacaacat
actgttttggtcaagcgcattgcttatcatttactggcaaggttgccagcaagtgtgtta
gtcgatgacttaattcaatcgggtatgattggtttatttgaagcagccaaaaattttgat
aatagcaaaggtgctagttttgaaacatttgctggcattagaattcgtggcgctatgctt
gatgaaatacgtcgaggcgattggacgccaagatctgttcacaaaaatagcagaatgata
agtgaagccattaaacaactcgaagcgcagcgtggtcgagatgtttctgatattgaagtg
gctgaaaaacttgatatttcactaaatgactaccatcatatattaagtgaagtcagtaca
ggaaaaatactcggcattgacgatttaggcgttaatgaagatgcgataaaattagctgat
agttgccgtggtgatgatccatatcatagtattgaacacagtgcttttaaaaaaggccta
gctcaatgcattagctctttaccagagagagaagctttagtactgtctctatattacgat
gaagaattaaacttacgagaaataggtcaagttcttgatgtaagtgaatctagggtaagc
caaatacatagtcaagcgatgcatcgtctaaaagcacgcatgcattcttggcaaagttag
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