Colwellia sp. MT41: CMT41_06110
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Entry
CMT41_06110 CDS
T04159
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
com
Colwellia sp. MT41
Pathway
com03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
com00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMT41_06110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
com03019
]
CMT41_06110
Enzymes [BR:
com01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CMT41_06110
Messenger RNA biogenesis [BR:
com03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CMT41_06110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ALO34353
LinkDB
All DBs
Position
1442548..1443900
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AA seq
450 aa
AA seq
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MSVDTIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGTDLLASAQTGTGKTAAFSLPIL
DAIAKANHAAHSANTSGNEKSASGQALRALILTPTRELAKQVADNIKQFSQFMPIKTAAI
YGGGKMASQTKVLKQGLDVLVATPGRLLEHLALHNVDLSQVKFLVLDEADRMLDMGFLTD
IEKLMLAIKHNHQTLMFSATFSERVKSLANKLLKTPKTISVSRENTTSGKIKQSVYWVSE
ARKRELLSELIGVNNWQQVLVFAGTKESANLLAKELKLDGIKTALCHGDKTQGARNKALE
QFKEGKVRVLVATDVAARGLDIEDLPYVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLV
SPKDERFLGNIEELIGRKFERIVVPGYEFNRQEAEAYQEENIKRESKNRYRATQEKNQNV
AKKDVKSKAQQKNKMARTNSKYNSKIKRKR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatacaattggcttatcagcggatttattaaaagcggttaaggcctgtggt
tataaaaatttaacccccattcaacaagaagctattcctgttattcgccaaggcacagat
cttttagcgagtgcacaaacgggtactggaaaaacagcagcttttagcttacccatttta
gatgccattgctaaagccaaccatgcagctcacagtgcgaatacttcaggtaatgaaaaa
agcgcatcaggtcaagcacttcgcgcgttaatattaacgccaacccgtgagctggccaaa
caagttgctgataacatcaaacaatttagtcaattcatgccgataaaaactgccgctatt
tatggtggcggtaaaatggcctcacaaactaaggtgctaaaacaaggacttgacgtttta
gtggccacacctggtcgtctgttagagcacttagccttgcataatgtagatttatcacaa
gtgaaattccttgttttagatgaagccgatcgcatgctggatatgggttttttaaccgat
attgaaaagttgatgttagcgattaaacataaccatcaaacgttaatgttttccgccact
ttttcagaacgggtcaaatcattagccaataaattgttaaagacgccaaagaccattagc
gtttctagagaaaacaccacatcaggtaaaataaagcaatcagtttactgggtaagtgaa
gcgcgcaaacgtgaattactttctgagttgatcggggtgaataactggcagcaagtactt
gtttttgctggcaccaaagaaagtgctaacctcttagcaaaagagctaaaacttgacggt
attaaaacggcattatgccatggcgataaaacccaaggtgcaagaaataaggccttagag
caatttaaagaaggtaaagtgcgcgtattagtggcaaccgatgttgctgctcgaggctta
gatattgaagatcttccctatgtagttaactttcatttaccctttttacctgaagattat
gtccatcgtgttggccgtacgggccgggcgggaaaatcaggaacggctatttctttagta
agccccaaagatgaacgttttttaggtaatattgaagagcttattgggcggaaatttgaa
cgtattgtcgtaccaggttacgagtttaatcgccaagaagccgaggcttatcaagaagaa
aacattaagcgtgagagtaaaaacagatatcgtgctacccaagaaaaaaatcaaaacgta
gctaaaaaagacgttaaaagtaaagcacagcagaaaaataaaatggcgcgaactaacagt
aaatacaatagtaaaattaaaaggaagcgctag
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