Colwellia sp. MT41: CMT41_09395
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Entry
CMT41_09395 CDS
T04159
Name
(GenBank) DNA/RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
com
Colwellia sp. MT41
Pathway
com03420
Nucleotide excision repair
com03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
com00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CMT41_09395
03430 Mismatch repair
CMT41_09395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
com03400
]
CMT41_09395
Enzymes [BR:
com01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMT41_09395
DNA repair and recombination proteins [BR:
com03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CMT41_09395
MMR (mismatch excision repair)
Other MMR factors
CMT41_09395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
Viral_helicase1
AAA_30
UvrD_C
PhoH
AAA_11
TsaE
T2SSE
PKD_4
nSTAND3
DEAD
Fusion_gly
DUF3472
AAA_16
AAA_29
PIF1
AAA_7
CxxCxxCC
Motif
Other DBs
NCBI-ProteinID:
ALO34908
UniProt:
A0A0S2JFV1
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All DBs
Position
complement(2187500..2189428)
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AA seq
642 aa
AA seq
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MATQELDISQLTSESQQVIQLIRQGHSFLLSGGAGSGKTYSLVEVLKAVLVEKPTSSIAC
ITYTNAAVHEIEERVQHDQLHVSTIHDFLWRNIKHFQCELKCTLIELMNDDEQPKIKSPD
GETVAVDFFNELESDIKYKEFVKIKDGCISHDEVLILACKMYEKYEKLCTITKDSYPLIL
VDEYQDTDPNVVKLLLEHLNQSPKNNIVGFFGDAMQSIYPGSVGNLNEYTQQVPPRVTEV
KKVQNRRNPQLVIDLANKIRTDGLLQEPSKDINAPNMNADGTAKQGTALFLYSNNDDLDV
VRHNLAWDFDDSTKTKELNLTHNLIAGKAGFDDLMRIYDKDKVLEFIKRVKGYIKKDDNK
IETEGKTFKQVYGELGGLKDDVPKLLAPTKGQREYIDANPQAYHFAFEQPYDEISKLYID
KDMLLDDKKNNAEDLSKPASKRDDLIKHLFKIEHCIHLYKEKRFNEFSRITDFSITSVED
KKCLKESMDALIEVEERSIGDVIGFASTLNLVVVDDKLERFQISRNYVYQQICQIPYQQF
RDLYQYLEGYTPFSTQHKTKGAEYSNVLVVLDNGKWNSYNFNYLFEGNGNDNVRHKTEKI
FYVCCTRAKENLAVFFHQPSANVIAKASEWFGVDNIVNLDEI
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggctacgcaagagttagatatatcccaacttacgtctgaatctcaacaagttattcaa
ttaatcaggcaaggccatagcttccttttaagtggtggtgcgggtagcggtaaaacctac
tctcttgttgaagtattaaaagctgtattggttgaaaagccaacgtcttcgattgcttgt
attacctatactaatgcagcagtgcatgagattgaagagcgtgttcaacatgaccagctt
catgtatcgactattcatgattttttatggcgtaatattaaacattttcagtgtgagtta
aagtgcactttgatcgaattgatgaatgatgatgagcagccgaaaataaaatcacctgat
ggagagactgttgcggttgatttttttaatgaacttgaaagtgacattaaatataaagaa
tttgtaaaaattaaagatgggtgtatctctcatgatgaggtgttaattctagcttgtaaa
atgtacgagaaatatgaaaaactttgtacgattactaaagattcctacccacttattctc
gttgatgagtatcaagatacagacccaaatgttgtcaaattattacttgaacatttaaat
caatctccaaaaaacaacattgttggttttttcggtgatgcgatgcaatctatttaccct
ggcagtgtcgggaatttaaatgaatatactcaacaagttccaccgcgtgttactgaagtc
aaaaaagtacaaaaccgacggaaccctcaactcgttattgatctcgccaacaaaataaga
actgatggtttattgcaagagccatctaaagatattaatgcccccaatatgaatgcagat
ggcacagcaaagcaagggaccgcacttttcctatattctaataatgatgatttagatgtt
gttcgccataacttggcttgggattttgatgattctacgaagactaaagagcttaaccta
actcataacctaattgcagggaaagcaggttttgatgatttaatgcgtatttacgataaa
gataaagttttagaatttattaagcgtgttaagggctatatcaaaaaggatgataataaa
atagaaactgaagggaaaacatttaagcaagtatatggggaattaggtggtttaaaagat
gatgttcctaaactactagcgcctaccaaaggacagcgagaatatatagatgctaaccct
caagcatatcattttgcattcgagcagccttacgatgaaatatccaaactctacattgat
aaagatatgttgcttgatgacaaaaaaaacaatgcggaagacttaagtaaacctgcctct
aaaagagatgatttgattaaacatttatttaaaatagaacactgtattcatttgtataaa
gaaaaacgattcaatgagttttcacgaataactgatttttcaattacttcagtagaagat
aaaaaatgcttaaaagaatcaatggatgcattgattgaagtagaagaacgatctattggc
gatgtgataggctttgcaagcacactgaaccttgttgttgtagatgataaattagaaagg
tttcaaatatctagaaattatgtttaccaacaaatctgtcaaataccttaccaacaattt
agagatttatatcaatatctagaaggttatactcccttttcaacgcagcataagactaaa
ggtgctgagtactctaatgtacttgtcgttttagataatggtaagtggaatagttacaat
tttaactatttatttgaaggtaatggcaacgataatgtacgtcataaaacagaaaaaata
ttttatgtttgttgtacaagagcgaaagaaaatcttgctgttttttttcatcaacctagt
gctaatgttatcgctaaagccagtgaatggtttggtgttgataatattgttaatttggat
gagatatag
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