Colwellia sp. MT41: CMT41_11170
Help
Entry
CMT41_11170 CDS
T04159
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
com
Colwellia sp. MT41
Pathway
com03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
com00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMT41_11170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
com03019
]
CMT41_11170
03009 Ribosome biogenesis [BR:
com03009
]
CMT41_11170
Enzymes [BR:
com01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CMT41_11170
Messenger RNA biogenesis [BR:
com03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CMT41_11170
Ribosome biogenesis [BR:
com03009
]
Prokaryotic type
rRNA helicases
CMT41_11170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ALO35216
UniProt:
A0A0S2JH88
LinkDB
All DBs
Position
complement(2614638..2616461)
Genome browser
AA seq
607 aa
AA seq
DB search
MTDQSNPENTENTEAVTFDSLGLPEDLLSAITSIGFTSATDIQAQTIPPLLAGKDVLGEA
QTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKNMQGLRVATLY
GGQSYGPQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDDLRVCVLDEADEMLNMGFLEDI
QWILDHLPKTTQMCLFSATMPQAIRKIANRFLKDPEHIKIAALKKSKANITQYAWKVSGI
SKMTALERIAETVEFDAMIVFVRTRNDTVDIAEKLERAGYPALALNGDMNQVQRERCITQ
MKSGQSSILVATDVVARGLDIPRISHVINYDLPGDNEAYVHRIGRTGRAGREGTAISFVR
PREMYSLRHYERLTSGTVNMYELPNIEELGKKRIERARVEISTIVSDKDLTSMREIIEAM
AAESELSMTDLAAALLYQKQLKQPLQPKEDPKPRRDTRDNSRDRNSRDRNDRGGRDNRRD
SRSDSRGERNGNRGSRDDRPRKEKVNRNDVDWQTYRLEVGKDHGARPGDIVGAIANEISL
DSSYIGAINLHDKHSFVQLPKGIPADLFNKLKAVRVRRQPLAITTSDEVIVSQKRAPRRT
DRAPRHS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcaaagcaatcccgaaaataccgaaaatactgaagctgttacatttgattct
ttaggtttacctgaagatttattatctgcgataacgtctatcggcttcacttcagcaact
gatattcaagcacaaactattcctccgcttttagctggtaaagatgttttaggtgaagcg
caaacaggtacaggtaaaacagctgcttttggcttacctgcactagcaaaaatagatact
tcaattaaaaaaccacaattgatggttttagcaccaacacgtgaattagcaatgcaagtt
gctgaagccatagaatctttcggtaaaaacatgcaaggtttacgtgttgctaccttatat
ggtggtcaatcctatggaccacaatttcaacaactagagcgtggcgcacaagttgttgtc
ggcactccaggtcgtttaatggaccatttacgtcgtaaaagcttaaaattagatgactta
cgcgtttgtgtattagatgaagccgatgaaatgttaaacatgggtttcttagaagatatc
cagtggattttagaccatttaccaaaaactacacaaatgtgtttgttctcggcaactatg
ccacaagcaatcagaaaaattgctaaccgtttcttaaaagatccggagcatataaaaatt
gcagcattaaaaaaatccaaagcaaatattactcagtacgcatggaaagtaagcggtatt
agcaaaatgacggcattggaacgtattgctgaaactgttgaatttgatgccatgattgtt
tttgttcgtacacgaaatgataccgttgatattgctgaaaagttagagcgtgctggttat
cctgcactagccttaaatggtgatatgaaccaagtacaacgtgaacgttgtattactcaa
atgaagtcgggtcaatcttctatcttagtagcaaccgatgttgttgcccgtggcttagat
atcccacgtatttctcatgtaattaactatgacttgcctggtgataacgaagcgtatgtg
catcgcattggtcgtaccggacgtgcaggtcgtgaaggcacagcaatctcatttgttcgt
cctcgtgaaatgtattcattacgtcactatgagcgtttaacctctggcacagtgaatatg
tatgagttaccaaatattgaagaacttggtaaaaaacgtattgaacgtgctcgtgttgaa
atttcgactattgtcagtgataaagatttaactagtatgcgcgaaattattgaagccatg
gctgcagagtctgagctgtcaatgactgatttagccgcagctttgttatatcaaaaacag
ttaaagcaaccactacagccgaaagaagatcctaaaccgcgtcgtgatactcgtgataat
agtcgcgacagaaacagccgagatcgtaatgaccgaggtggtagagataatcgtcgtgac
tctcgtagtgatagccgtggagagcgaaatggcaaccgtggctcacgtgatgacagacct
cgtaaagaaaaagtaaaccgtaacgatgttgattggcagacttaccgtcttgaagtaggt
aaagaccatggggcacgtccaggtgatatcgttggtgctattgccaatgaaatttcactt
gatagcagttatatcggtgcgattaacttgcacgataaacatagttttgtgcaattacca
aaaggtattcctgccgacttgtttaacaaattaaaagctgtccgtgtccgtcgtcaacct
ctagcaatcactacttcagatgaagttattgttagtcaaaaacgtgcacctcgtcgtact
gaccgtgcaccacgccatagttaa
DBGET
integrated database retrieval system
