Colwellia sp. MT41: CMT41_11945
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Entry
CMT41_11945 CDS
T04159
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
com
Colwellia sp. MT41
Brite
KEGG Orthology (KO) [BR:
com00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
com03016
]
CMT41_11945
Enzymes [BR:
com01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CMT41_11945
Transfer RNA biogenesis [BR:
com03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CMT41_11945
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
ALO35353
UniProt:
A0A0S2JH54
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All DBs
Position
complement(2787629..2788768)
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AA seq
379 aa
AA seq
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MHYQLIEDQLSLNTLCEQLAKAKVLAIDTEFVRTRTLYAKLGLLQVCDGEQLALIDPLAI
DDLTPFWQLLTNGNITKVLHACSEDLEVFLTAGNCQPVNLIDSQIMMSFLGHGLSLGYAA
MVKHFTDIELDKSESRTDWTKRPLTEKQLAYASADVDHLFLLYPTLLAELTQAGFLAYAK
LETQNMIDKKFTPVNESDMYLNIKMGWRLNPKQLNVLKYLATWRFQQAQKRDLPIGFIAK
DHTLMALAQSNPVSVSAMLNLEGAEALDIRHKGKAMLAVLAKADKTEVSDYPETINRLDD
YPAYKQTFKKVKAFLVQVSERNGLAIENIASKKQINHFLTWQFGLNGACSSAKKVELLSS
WRNELFGEALTTFAKQGYK
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgcattatcaattaattgaagatcaactcagcttaaatacgttatgtgagcaactcgct
aaggcgaaagtgttagccatagatactgagtttgttcgtacccgtacgctatatgccaag
cttggtttacttcaggtttgtgatggtgagcaacttgcccttattgatccccttgccatt
gatgatttaacacctttttggcaattgctcaccaatggcaatatcactaaagtgttacat
gcctgctcagaagatttagaagtttttttgactgcaggaaattgccaaccggtaaattta
attgatagtcagatcatgatgtcatttctggggcatggcctatctttgggctatgctgct
atggtaaaacatttcactgatatcgaattagataagtctgagtcacgtactgactggact
aaaaggccgttaacggaaaaacaactagcctacgccagtgccgatgttgatcatttgttc
ttgctttacccaacattattagccgaactaacgcaagcgggttttttagcctatgcaaag
ctagaaacgcaaaatatgattgataaaaaattcacaccagtgaatgaaagtgacatgtat
cttaatattaaaatggggtggcgtttaaatcctaagcaattaaatgtgttaaagtacctg
gcaacttggcgctttcaacaagcacagaaacgtgacttgcctattggctttattgctaaa
gatcacaccttaatggcattagcgcaaagtaatccggtcagtgttagcgctatgttaaac
cttgaaggggcggaagctctcgatattcgccacaaaggtaaagctatgttggcagtgtta
gctaaagcggataaaactgaggtaagtgactatccagaaacaattaatcgcctcgatgat
tacccggcttacaaacaaacgtttaaaaaagtaaaagctttcttagtgcaggtaagtgaa
cgaaatggcctagcgatagaaaatatagcttcaaaaaagcaaatcaatcacttcttaacg
tggcaatttggtcttaacggtgcgtgcagtagtgcgaaaaaagttgagttattatcaagt
tggcgtaatgagttatttggtgaagctttaacaacgtttgcgaaacaaggttataagtaa
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