Colwellia sp. MT41: CMT41_13965
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Entry
CMT41_13965 CDS
T04159
Name
(GenBank) RNA helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
com
Colwellia sp. MT41
Brite
KEGG Orthology (KO) [BR:
com00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
com03009
]
CMT41_13965
Enzymes [BR:
com01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CMT41_13965
Ribosome biogenesis [BR:
com03009
]
Prokaryotic type
rRNA helicases
CMT41_13965
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALO36709
UniProt:
A0A0S2JL47
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All DBs
Position
3282539..3283795
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AA seq
418 aa
AA seq
DB search
MFEQFDLDSELLASIKKLGYTKPTSIQDLVIPEAMAGKDILASAPTGTGKTAAFLLPIAQ
HLLDYPRTQPGFPRVLILTPTRELAIQIGEDCKQITELTKIKTGVITGGVNYGSHTDILT
TTTDILVATPGRLLEYIENEQFDARDIEILVLDEADRMLDTGFSEAINRIVAEARWRKQT
MLFSATLEGAGVLGFAKEVLDDPIFLESNPSRKEKAIIHQWLHLADDSHHKLNMLVNILK
QEGVERTVVFANKRETVQYLSGKLYAEELPCVWLEGKMPQDKRNKAISRFKSGEIKVLVA
TDVAARGLDIDNITHVINFDMPRKVDIYIHRIGRTARAGNKGTAISLVEAHDMAVIGKIE
RYTKERLPRRVIQDLRPQHKESRVVNKKVKLKLTNSQKKAKAKKQVKKNAKQAKKAAK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagcaattcgatctagactcagaattattagccagtatcaaaaaacttggttat
accaagcctacctcaattcaagatctagtgatccctgaggcgatggccggcaaagatata
ctagcatcagccccgaccggtacgggtaaaaccgccgcctttttactgcctattgctcaa
catttattagactacccgcgtactcaaccgggctttcctcgggtattaatattaaccccg
acacgagagttagcgattcaaattggtgaagactgtaagcaaattaccgagctaactaaa
ataaaaacgggtgtgataacgggtggcgttaactacggcagtcatacagatatcctaaca
acgacaacagatatcttagtggcaacgccaggtcgattattagaatatattgaaaacgag
cagtttgatgcccgtgacattgaaattcttgttttagatgaagccgatcgcatgctcgat
actggttttagtgaggccatcaaccgcattgttgctgaagctcgctggcgtaaacaaacc
atgctattttcagcaaccttagaaggtgctggtgtactaggttttgccaaagaagtacta
gacgatcctatatttttagagtcaaacccatcacgtaaagagaaagccatcattcaccaa
tggctacacctagctgatgactcacaccataaactcaatatgttagtcaatattcttaag
caagaaggtgttgagcgtaccgtcgtttttgctaataaacgggaaactgtacaatacctt
tccggtaaactttatgcggaagagttaccttgtgtttggctagaaggtaaaatgccacaa
gataaacgtaacaaagctatttcacgttttaaaagtggcgaaattaaagtattagtggca
accgatgttgccgcccgcggtttagatatagacaacataacgcatgtcattaattttgat
atgccacgcaaggttgatatttatattcaccgtattggccgcacagctcgtgccggtaac
aaaggaactgctatttccttagttgaagcacacgatatggctgttattggtaaaatagag
cgttataccaaagaacgtctaccacgtcgtgttattcaagatttacgtccacagcacaaa
gaatcgcgtgtggtcaataaaaaggtaaaacttaaactcactaactcgcagaaaaaagcc
aaagctaagaaacaagtgaagaaaaacgctaagcaagcaaaaaaagccgcgaagtaa
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