Colwellia sp. MT41: CMT41_15905
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Entry
CMT41_15905 CDS
T04159
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
com
Colwellia sp. MT41
Pathway
com02020
Two-component system
com02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
com00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CMT41_15905
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CMT41_15905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
com03021
]
CMT41_15905
Transcription machinery [BR:
com03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CMT41_15905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
ALO36044
LinkDB
All DBs
Position
3757508..3759025
Genome browser
AA seq
505 aa
AA seq
DB search
MRPTLQLRIGQQLTMTPQLQQAIKLLQLSTLELQQEIQEVLESNPLLELDEKVENENTSD
ENNLEEAFTTSVSETNTELTTSDGSEEQPASIDEISTTEAMEKKEIPEELNIDTTWEESY
SAGVSNTGAVSSPADDYTYQGETTDSIQDHLLWQMELTPFTDTDKTIAIAIIEAVDDAGY
LTVSPEEILESVGTEGLEQDEVEAVLKRINMFDPIGVAARSIADCLLIQLNQFSADTPYL
KESKLIINEHIDLLGNRDYRQLMRKTKLKEDQLREVMRLIQSLNPRPGDAVIKGNNQYVI
PDVTVEKKNGRWVVELNSDTAPKLSINKQYAAMSKTMKSSTNDGQFIRSNLQEAKWFIKS
LESRNDTLLKVSNCIVQRQQGFLEHGAEAMLPMVLNDIAEAVDMHESTISRVTTQKYMHT
PRGIFELKYFFSSHVSTENGGECSSTAIRSLIKKLILAETPAKPLSDSKMADILAEQGIK
VARRTIAKYRESLAIPPSNQRKSLL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctacactacagctccgtattggacaacaattaaccatgactccgcagttgcaa
caagcaatcaagctgttgcaactgtcaacgttagaattacaacaagaaattcaagaagta
ttagagagcaatccattacttgagcttgatgaaaaagttgaaaatgaaaatactagcgat
gaaaacaatcttgaagaagcatttacaaccagtgtctctgaaactaacactgagctgaca
acaagtgacgggagtgaagagcaaccagcaagtattgacgaaatcagtaccactgaggcc
atggaaaaaaaggaaatacccgaagaactaaatatcgataccacctgggaagaaagttac
agtgctggcgtttcaaataccggcgcagttagtagccctgccgatgattatacctatcaa
ggggaaaccacggactccattcaagatcatctattgtggcaaatggaattaacgcctttc
actgataccgataaaaccatcgctattgccattattgaagcagttgatgatgccggttat
ttaaccgtatcaccagaagaaattctagaaagtgtcggtacagaagggctagagcaggat
gaagttgaagcggtcttaaaacgtattaatatgtttgaccctattggcgtcgctgctcgc
tcaattgctgattgtttacttattcagttgaatcaatttagtgctgataccccttatctg
aaagaaagtaaactcattatcaatgaacatattgatttacttggtaaccgagattaccgt
cagttaatgcgtaaaaccaaattaaaagaagatcaactgcgtgaagttatgcgtttaatt
caaagcttaaatcctcgtccaggtgatgcggtaattaaaggtaataaccaatacgttatt
cctgatgttaccgttgaaaagaaaaatggtcgctgggtggttgagttaaattcggacacg
gcaccaaaactctctattaataagcaatatgcggccatgtctaaaacaatgaaatcatca
actaatgatggtcaatttattagatcaaacttgcaagaagccaaatggtttattaagagc
ttagaatctcgtaatgacaccttactcaaggtgtccaattgcatagttcagcgtcagcaa
ggatttttagagcatggtgctgaagccatgcttcctatggtgctcaatgatattgctgaa
gctgttgatatgcacgaatccaccatatctcgagtgaccacgcaaaaatacatgcacaca
ccaagagggatttttgagttaaaatacttcttctccagccatgttagtaccgaaaatggt
ggtgaatgttcatcgaccgcaattcgttctttaattaaaaaacttatcttagcggaaaca
cctgctaaaccgttaagtgacagcaaaatggctgatatactggccgagcagggaataaaa
gtggcgcgacggactattgctaaataccgagaatcattagcgataccaccatcaaaccaa
cgtaagagtttactttaa
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