Colwellia sp. MT41: CMT41_16960
Help
Entry
CMT41_16960 CDS
T04159
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
com
Colwellia sp. MT41
Pathway
com03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
com00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CMT41_16960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
com03021
]
CMT41_16960
03400 DNA repair and recombination proteins [BR:
com03400
]
CMT41_16960
Enzymes [BR:
com01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CMT41_16960
Transcription machinery [BR:
com03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CMT41_16960
DNA repair and recombination proteins [BR:
com03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CMT41_16960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ALO36235
UniProt:
A0A0S2JJS1
LinkDB
All DBs
Position
complement(4002262..4006488)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKQQNQTEDFDGIRIGLASPDLMRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEPGMTTLEKSQILTEEEYLDALEEHGDEFDALM
GAEAILSLLQQIDLEVEVAQMREELPEIGSETKRKKITKRLKLMEAFAASGNKPEWMIMN
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKKMALELFKPFIYGLLERRGLATTIKAAKKLVEREGAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQMEA
RTLMMSTNNVLAPANGEPIIVPSQDVVLGLYYLTRDRVNGKGEGMIFADIKEAEKAYRTE
VAELHARVKVRITEYSKDAEGNFTIATTTLRNTTVGRAIMWQICPKGLPFDLIDLPLGKK
PISKLINHAYRNLGLKQTVIFADQIMYTGFHYAMIAGASVGIEDMVIPAAKYTIIEDSEA
EVAEIQAQFEQGLVTEGEKYNKVIDIWSSANEKVSKAMMDNLSKEMVMNKDGEMEEQDSF
NSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVVTNHDCGTTDGLLMTPLIEGGDVVEPLRERV
LGRVVCDDVLIPGTEEILLPRNTLIDETLCDLIEANSVDQIKVRSIITCKTDFGICAFCY
GRDLARGHMINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRATAENNVQVKNTGHMK
LQNAKFVINSDKNLVITSRSSELTIIDEMGREKERYKVPYGSVLTKNDGQSVTIGDIVAT
WDPHTHPIITEVKGKVQFVDLVDNVTMVRQTDELTGLSSIVITDAAQRNVTGKEMRPALK
LVDSKGNDVMIAGTEIPALYYLPGNAIVNLEDGAEVGVGDALARIPQASSKTRDITGGLP
RVADLFEARKPKLPAILAEKTGVVAFGKETKGKVRLLITQPNGDVYEEMIPKTRQLNIYE
GEPVIKGELIADGPESPHDILRLRGVPAVANYIVNEVQEVYRLQGVKINDKHIEVIVRQM
IRKCEITASGDSRFLKGEQVEVARVNISNRELEAAGKQPAEYEIQMMGITKASLATESFI
SAASFQETTRVLTEAAVAGKKDGLRGLKENVIVGRLIPAGTGYSYHQERARRKAAALNPV
ADTKVSADDAEKALTDALNADLLSGDNK
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacagaatcaaaccgaagatttcgatggtatt
cgtatcggcttagcatcacctgatttaatgcgttcatggtcttttggtgaagttaaaaag
ccagaaaccattaactaccgtacctttaaaccagagcgtgatggtttattctgtgctcgt
atatttggcccagtaaaagactacgaatgtctttgtggtaaatataaacgtttaaagcat
cgcggcgtaatctgtgagaaatgtggtgttgaagtaacattgactaaagttcgtcgtgac
cgtatgggtcatatcgaattagcaagtccagttgcccatatctggttcttaaaatcatta
ccatcacgtattggtttattacttgatatgaccttgcgtgatatagaacgtgtgctttat
tttgaatcatatgttgttaccgagccaggtatgacaacattagaaaaaagccaaattcta
acggaagaagagtatcttgatgcgttagaagaacatggtgatgaatttgatgccttaatg
ggcgcagaagccatcttatctttactacaacaaattgatttagaagtcgaagtagcgcaa
atgcgtgaagagcttcctgagattggtagtgaaactaaacgtaaaaaaattactaaacgt
ttaaaattaatggaagcattcgctgcttcaggtaacaaacctgagtggatgatcatgaac
gtactaccaattttaccaccggatcttcgtccgttagtaccattggatggcggccgtttt
gctacctctgatttaaacgatttataccgtcgtgttattaaccgtaacaaccgtttaaaa
cgtctgctagacctagttgcaccagatattatcgtccgtaacgaaaaacgtatgttacaa
gaatctgttgatgcattattagataacggtcgtcgtggtcgtgctattactggttctaac
aaacgccctcttaaatctcttgccgacatgattaaaggtaagcaaggtcgtttccgtcag
aatttattaggtaaacgtgtcgattactcaggtcgttcggtaattaccgttggtccaaca
cttaaactacatcaatgtggtttaccgaagaaaatggccttggaattattcaaaccattt
atctacggtctactagagcgtcgtggcttagcaacaacgattaaagcggctaagaaatta
gttgagcgtgaaggcgctgaagtttgggatgtacttgatgaagtaatccgtgaacatcca
gtaatgcttaaccgggcaccaacactacatagattgggtatccaagcgtttgaacctgtg
ctgattgaaggtaaagcaattcatcttcacccactcgtttgtgcggcatacaatgccgat
ttcgatggtgaccaaatggcggtacatgtacctcttactatcgaagcacaaatggaagca
cgtacgttgatgatgtcaaccaacaacgtattagcaccggctaacggtgagccaatcata
gtaccatcacaagatgttgttttaggtctttattacctaacacgtgaccgtgttaatggt
aaaggtgaaggcatgatctttgccgacatcaaagaagctgaaaaagcataccgtactgaa
gtagctgaattacatgctcgtgtcaaagttcgtatcactgagtactctaaagatgcggaa
ggtaactttaccatagcgacaacaacgttacgtaacacgactgtcggtcgtgccattatg
tggcagatatgtccaaaaggactaccgtttgatttaattgatttaccattgggtaaaaaa
ccaatttcgaaattaatcaatcatgcctatcgtaacctaggtttaaaacagacagtaatc
ttcgccgatcaaatcatgtataccggttttcattatgcaatgatagcgggtgcatcggtt
ggtattgaagatatggttattccagctgctaagtacaccatcattgaagattcagaagct
gaagttgctgaaattcaagcacagtttgagcaaggtctagtcactgaaggtgagaagtac
aacaaagtaatcgatatctggtcgtctgcgaacgaaaaagtgtcgaaagcgatgatggat
aacttatcgaaagaaatggttatgaacaaagatggtgaaatggaagaacaagattctttc
aactctatctttatgatggctgactcgggtgctcgtggtagtgccgcacagattcgtcag
cttgcaggtatgcgtggcttgatggctaaaccagatggttcaatcatcgaaacaccaatc
acggctaacttccgtgaaggtcttagcgtattacaatacttcatctcgacccatggtgcg
cgtaaaggtcttgccgatactgcacttaaaacagctaactcgggttacttaactcgtcgt
ctagttgatgttgcccaagatttagtggttactaatcatgactgtggcaccacagatggt
ttattaatgacaccattaatcgaaggtggtgatgttgttgagccgcttagagaacgtgtg
ctaggtcgtgtggtttgtgatgacgtattaattccaggtactgaagaaatattacttcct
cgtaataccttaattgatgaaacactttgtgatcttattgaagccaattcagtagatcaa
atcaaagtacgttcaatcattacttgtaaaactgactttggtatttgtgccttctgttat
ggtcgtgatttggcccgtggtcatatgatcaaccaaggtgaagctattggtgttgttgcg
gcgcaatcaattggtgaaccaggtacacagctaaccatgcgtactttccatattggtggt
gcagcatcacgtgctactgcagagaataacgtacaagttaaaaatactggtcatatgaag
ttacaaaatgctaagtttgtaatcaattcagataaaaatctggttataacctcgcgttca
tcagaattaaccattattgatgaaatgggtcgtgagaaagaacgttataaagttccttat
ggctctgtgctgactaaaaatgatggtcaatcagttaccattggcgacatagtcgctacc
tgggacccacatactcaccctattatcacggaagtaaaaggtaaggtgcaatttgttgac
ctagttgataacgtaaccatggttcgtcaaactgatgagttaacgggtttatccagcatt
gttattaccgatgcagcacaacgtaatgttaccggcaaagaaatgcgtccggcactgaaa
cttgttgatagtaaaggtaatgatgtaatgatcgctggtactgaaattccagcactttac
tacttgccaggtaatgcaatcgttaacttagaagatggtgcggaagtaggcgttggtgat
gcactagctcgtataccacaagcaagttcaaaaactcgtgatattaccggtggtctacca
cgtgttgctgatttatttgaagcgcgtaaacctaaacttccagccattctggccgagaag
actggtgtggttgctttcggtaaagaaactaagggcaaagtacgtttattgattactcag
cctaacggtgacgtttacgaagagatgattcctaaaacacgtcaattaaatatctatgaa
ggtgagccagtgattaaaggtgaattaatcgccgatggtcctgaatcgccacatgatatt
ttacgcttacgtggtgttcctgcggttgctaactacattgttaacgaagtacaagaagtt
taccgtttacagggtgttaagattaacgataaacatattgaagttatcgtccgtcagatg
atccgtaagtgtgaaatcactgcatccggtgattctaggttccttaaaggtgagcaagtt
gaagtggcgcgagtgaatatctcaaaccgtgaacttgaagctgccggtaagcagccagct
gaatatgaaattcaaatgatgggtattaccaaagcatcacttgcaactgaatcatttatt
tcagcggcctctttccaagaaacaacacgtgtacttactgaagctgctgttgcaggtaag
aaagatggtctacgtggcttgaaagagaatgttattgttggtcgacttatccccgcaggt
acgggttattcgtatcatcaagaacgtgctcgacgtaaagctgcagcattaaaccctgtt
gctgacacaaaagtttcagcagatgatgcagaaaaagcattaacagatgctttgaatgca
gatttactatcaggcgataataaataa
DBGET
integrated database retrieval system
