Comamonas sp. B21-038: MJ205_09330
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Entry
MJ205_09330 CDS
T10658
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
comb Comamonas sp. B21-038
Pathway
comb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
comb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJ205_09330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
comb03019
]
MJ205_09330
Enzymes [BR:
comb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MJ205_09330
Messenger RNA biogenesis [BR:
comb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MJ205_09330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ULR91022
UniProt:
A0AAN0MSQ4
LinkDB
All DBs
Position
2059329..2061107
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AA seq
592 aa
AA seq
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MNFEELNLAPAIVQAVREQGYDTPTPIQAQAIPLVLQGSDLLAGAQTGTGKTAAFTLPML
QRLTESQGSLNKWGNKAIRALILAPTRELAAQVEENVRLYAAHLDIKSTVIFGGVGMNPQ
IDRIKKGVDVLVATPGRLLDLQQQGFLDLSTVEILVLDEADRMLDMGFIHDVKKVLALVP
KDKQSLLFSATFSDEIRELANGLLKNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLH
IVQENNWSQVLVFTRTKFGANNVAEYLSKNGVSAMALHGNKSQSARTQALEGFKSGDLRA
LVATDIAARGIDIDELPNVVNYEIPNVSEDYVHRIGRTGRAGREGNAVSLVCMDEEGFMM
DIERFTKQDIPVQVLEGFGPEEGEKAEPIAMGRQTIWGGAGKAPGRDVMQAAAKAARQEM
MERVRTNKVARGPGGGNAGGGQRGGNAKRSPGPRGERAEGGADFGGEGMDQARREQRPPR
RDGRQGPRHPSGEARGPQRQSQGPRQGGAGAARGPRQDSERQPRADAHLGTQFGGTVDGR
DHRRSGAAQPDPMRTSVDSMAERGRRGGFGGGNRNGGGGGAGRGGRNHSFSR
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgaagaactgaatctggcacctgccattgtgcaggctgtgcgcgaacaaggc
tacgacacgcctactcccatccaagcccaggctatcccgctggtgctgcaaggcagcgat
ctgctggccggcgcacaaaccggcaccggcaaaacggccgccttcacgctgccgatgctg
cagcgcctgaccgagtcccaaggcagcctcaacaaatggggcaacaaggccatccgcgcc
ctgatcctggcccctacccgcgaactggccgcccaggtggaagaaaatgtgcgcctctac
gctgcacacctggacatcaagtccaccgtcatctttggtggcgttggcatgaacccccag
atcgaccgcatcaaaaagggtgtggatgtgctggtggccacacctggccgcttgctcgat
ctgcagcaacaaggctttctggacctgtccacggtcgagatcctggtgctcgacgaagcc
gaccgcatgctggacatgggtttcatccacgacgtgaagaaggtgttggccctggtgccc
aaggacaagcaaagcctgctgttctccgccaccttcagcgatgagatccgcgagctggcc
aacggccttctgaagaatccccagtccatccaggtgacgccgcgcaacaccacggtgcag
cgcatcaagcaggtgatccacccggtgggccgcggcaagaaaaagcaggtgctgctgcac
atcgtgcaggagaacaactggagccaggtgctggtcttcacccgcaccaagttcggcgcc
aacaacgtggccgaatacctcagcaagaatggcgtctcggccatggccttgcacggcaac
aagagccaaagcgcccgcacccaggcgttggaaggcttcaagtccggcgacctgcgtgcg
ctggtcgccaccgatatcgcagcgcgcgggatcgacatcgacgagttgcccaacgtggtc
aactacgaaatccccaatgtctctgaagactacgtgcaccgcattggccgcaccggccgc
gcgggccgcgaaggcaacgccgtgagcctggtgtgcatggatgaagaaggcttcatgatg
gacatcgagcgcttcacgaagcaggacatccctgtgcaggtgctcgaaggctttggccct
gaagaaggcgaaaaggccgagcccatcgccatgggccgccagaccatctggggcggcgcg
ggcaaggcccctggccgtgatgtgatgcaggcagcggccaaggctgcgcgccaggaaatg
atggaacgcgtgcgtaccaacaaggtggcacgtggccccggcggcggtaacgcaggtggt
ggccagcgcggcggcaatgccaagcgcagccccggcccacgcggtgagcgcgccgaaggc
ggtgctgattttggcggcgaaggcatggaccaggcacgccgcgagcagcgcccaccacgc
cgcgacggccgccaaggcccacgccacccatcgggtgaggcacgcggcccacaacgccag
tcacaaggcccgcgccaaggcggcgctggtgctgcccgtggcccccgccaggacagcgaa
cgccagccccgcgctgatgcccacctgggcacgcagtttggcggcacggtcgatggccgt
gaccaccgccgcagcggcgcggcacagcccgatccgatgcgcaccagcgtggacagcatg
gccgaacgcggccgccgtggcggcttcggcggtggcaaccgcaatggcggcggcggtggt
gctggccgaggtggccgcaaccactcgttctcgcgataa
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