Comamonas sp. B21-038: MJ205_11040
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Entry
MJ205_11040 CDS
T10658
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
comb Comamonas sp. B21-038
Pathway
comb02020
Two-component system
comb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
comb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MJ205_11040 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MJ205_11040 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
comb03021
]
MJ205_11040 (rpoN)
Transcription machinery [BR:
comb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MJ205_11040 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_23
HTH_38
HTH_3
CENP-B_N
HVO_A0261_N
LacI
Sigma70_r4_2
Sigma70_r4
CEP76_N
Glyco_hydro_63
Motif
Other DBs
NCBI-ProteinID:
ULR91331
LinkDB
All DBs
Position
2428080..2429456
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AA seq
458 aa
AA seq
DB search
MGSMLLRADTHQSQTLSPRLQRAVQMLQMSSLEFSALLRHKIDENPFLEEPDDSEEQEPS
VVLHDAAADDRLMWTAEPGLGAQVSAGLEPSAMDLAASPVSLAMHLHSQLNVMPLNPRDL
CAARAIVESLDDDGYLRTPLEDLLALLPASPALEMDELLVALRLVQSLEPAGTAARNVGE
CLALQCETIADPEVRALALAMVQDHLRALASHDVAKLSRQLKKGRCDIERAMDAIKRFNP
HPGWAYGAQQVDYIVPDVIVQRSGAHWHVQLNPAAMPRVRMNRVYESLFQRHRQRGHADL
GEHLQDARWTLRNVEQRCATILDVAQALVRRQHRFLEFGAMAMKPLMLREIAQELGIHES
TVSRVTNNKYIATPQGVFELKHFFSRPLLSASGKTCSATAIREVIAELIAAENPLQPLSD
ADITRQLAAQGLVVARRTVTKYRQLLRLEPVEKRRRHS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgggctccatgctattgcgcgccgacacgcaccagtcccagaccctgtcaccacggctg
cagcgggcggtgcagatgctgcagatgtcgtcgctcgaattttcggcgctgctgcggcac
aagatcgacgaaaacccgtttctcgaagagcccgatgacagcgaggaacaggagcccagt
gtggtgctgcatgatgcggcggccgacgaccggctgatgtggaccgctgagccgggcctg
ggcgcccaggtcagtgccgggctcgagccgtcggcgatggacctggccgccagcccggtc
agcctggccatgcacctgcacagccagctcaacgtgatgccgttgaatcccagagacctg
tgtgcggcgcgcgccattgtcgagtcgctggacgatgacggctatcttcgcacgccgctc
gaggacctgttggcgctgctgcccgccagccctgcactcgagatggacgagctgctggtg
gcactgcgcctggtgcaatcgctggagcccgccggcacggccgcccgcaatgttggcgaa
tgcctggcgctgcagtgcgagacgattgccgatccggaagtacgcgcgctggcgctggcg
atggtgcaggaccatctgcgcgcgctggcgtcccatgatgtggccaaactgtcccggcag
ctgaaaaaaggccgctgtgacatcgagcgggcgatggatgccatcaagcgcttcaacccg
caccccggctgggcctatggcgcccagcaggtggactacatcgtgccggatgtgatcgtg
cagcgcagcggtgcgcactggcatgtgcagctcaaccccgcagcgatgccccgggtgcgg
atgaaccgggtctatgaaagcctgttccagcgccaccggcaacgcggccatgccgatctg
ggcgagcatctgcaggatgcccgctggaccttgcgcaacgtcgagcagcgctgcgcgacg
atcctggatgttgcgcaggcgctggtgcggcgccagcaccgctttctggagtttggcgcg
atggcgatgaagccgctgatgctgcgcgaaattgcgcaggagctgggcatccatgaatcc
accgtctcgcgtgtcaccaacaacaagtacatcgccacgccccagggcgtgttcgagctc
aagcattttttctctcgcccgttgctgagcgccagtggcaagacctgttcggccaccgcg
atccgcgaggtgattgccgagttgatcgctgcagaaaacccgttgcagccgctgtcggat
gccgacatcacccgccaattggccgcgcaaggcctggtcgtggcccgccgtacggtgacc
aagtaccggcagctgctgcggctggagccggtggaaaagcgccggcgccacagctga
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