Comamonas sp. B21-038: MJ205_12775
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Entry
MJ205_12775 CDS
T10658
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
comb Comamonas sp. B21-038
Pathway
comb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
comb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MJ205_12775 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
comb03400
]
MJ205_12775 (mfd)
Enzymes [BR:
comb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MJ205_12775 (mfd)
DNA repair and recombination proteins [BR:
comb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MJ205_12775 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ULR87342
UniProt:
A0AAN0KGE6
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All DBs
Position
2792538..2796017
Genome browser
AA seq
1159 aa
AA seq
DB search
MELPKLTAGKRFQLPMPPGSADALLLATLATREAAGQRVTAIITADAGDAHRLQDELAFF
APELRVALFPDWETLPYDTFSPHQDLISERLAALWRISQGEADVVLIPATTALYRLAPPS
FLAGYTFAFKAGQKLDEARLKAQLTLAGYNHVSQVVSHGEYSVRGGLIDLYPMGSLVPYR
VDLFDDEIDSIRTFDPDTQRSLYPVKDVRLLPGREFPMDDEARARFRNKWREMLEGDPTK
SRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGSQATVVLHGDIEPAFQRFWQDTRDR
YRLVQGDPERPVLPPDSLFLSPDQFYATAKQMAQLSLRPQLEDVEHSAIFQKLGDLAVVR
GAEDPLAKLQQHIAQRQARTLLLAESDGRRESLLDFFRASGLNPPAFDSLAEFQQTTDEP
VGIATAALAKGFRWAEQGIDFVTETELFAATGGARRKRRQEQASDVEALIKDLSELKVGD
PVVHAQHGIGRYHGLINMDVGQKNPDGTPALQEFLHLEYADKAVLYVPVSQLAQISRYTG
VSAEEAPLHKLGSGQWEKARRKAAEQVRDTAAELLNIYARRAAREGHAFRYSPQDYEQFA
NDFGFEETADQRAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVAL
LAPTTLLAEQHYQTLADRFSKWPIKVALVSRFRSGKEVSTTIKGLDDGTVDIVVGTHKLL
SEKTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALDGLRDLS
VIATAPQRRLAIKTFVRSEGTGVIREAVLRELKRGGQCYFLHNEVETIENRRQKLEEILP
EARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSANTIIISRADKFGLA
QLHQLRGRVGRSYHQAYAYLMVPDLDGLTKQAAQRLEAIQQMEELGSGFYLAMHDLEIRG
AGEVLGDNQSGNMMEIGYQLYNEMLSEAVRSLKEGKEPDLLSPLSAATDINLHAPALLPN
DYCGDVHLRLSFYKKLATAKTSDQIDNLLEEIVDRFGKLPPQAQTLVDVHRLRVLCEPFG
VQKVDAAPGVINITFYPNPPIEPMTIISLIQKNKAIKLAGNDKLRIERALPEVKDRVQMV
RDVVRSLGKPVAAAAAATA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggaactccccaaactcaccgccggaaaacgttttcagctgcccatgccccccggcagc
gccgatgccttgctgctcgccaccttggccacgcgggaggcggccggccagcgcgtcacc
gcgatcatcaccgccgatgcgggcgatgcccaccgtctgcaggacgaactggcttttttc
gcacctgagctgcgcgtcgcactctttcccgactgggaaaccctgccctatgacaccttc
tcgccgcaccaggacctgatcagcgagcggctggcggcactgtggcgcatcagccagggc
gaggccgatgtggtgctgatccccgccaccacggcgctgtaccgcctcgcccccccgtcc
ttcctggcgggctacacctttgcgttcaaggccgggcaaaagttggacgaggcacgcctc
aaggcccagctcacgctggcgggctacaaccatgtctcccaggtggtgagccatggcgaa
tactcggtgcgcggcggcctgatcgatctctacccgatgggctcgctcgtgccctaccgg
gttgatctgttcgatgacgagatcgactcgatccgcacctttgaccccgacacccagcgc
agcctctacccggtcaaggatgtgcgcctgctgcccgggcgtgagttcccgatggacgac
gaggcccgcgcgcgctttcgcaacaagtggcgcgagatgctcgaaggcgaccccaccaag
agccgcatctacaaagacatgggcaacggcgtggccacggccggcatcgagtactacctg
ccgctgttctttgacgagaccgcgaccgtgttcgactacctgggcagccaggccaccgtg
gtgctgcatggcgatatcgagccggccttccagcgcttttggcaagatacgcgcgaccgc
taccgcctggtgcagggcgacccggagcgcccggtgctgccgcccgacagcctgttcctg
agccccgaccagttctacgccaccgccaagcagatggcccagctgtcgctgcgcccgcaa
ttggaagatgtggagcacagcgccatcttccagaagctgggcgatctggccgtggtgcgc
ggcgccgaagacccgctggccaagctgcagcagcacattgcccagcgccaggcccgtacc
ttgctgctggccgaaagcgatggccggcgcgagagcctgctcgacttcttccgtgccagc
ggcctcaacccgccggcctttgactcgctggccgagttccagcagaccaccgacgagccc
gtcggcatcgccactgcggcgctggccaagggctttcgctgggccgagcaaggcattgac
tttgtcaccgagaccgagctgtttgccgccaccggcggtgcccgccgcaagcgccgccaa
gagcaggccagcgatgtcgaggcactgatcaaggacttgtccgagctgaaggtgggcgac
ccggtcgtccatgcccagcacggcatcggccgctaccatggcctgatcaacatggatgtg
ggccagaagaaccccgatggcacaccggcgctgcaggagttcctgcacctggaatatgcc
gacaaggccgtgctctatgtgccggtcagccagctcgcacagatcagccgctacaccggc
gtatcggccgaagaggccccgctgcacaagctgggcagcggccagtgggaaaaagcgcgc
cgcaaggccgccgagcaggtacgcgacactgctgccgagctgctcaacatctacgcgcgc
cgcgcggcccgcgaaggccatgccttccgctacagcccgcaggactatgaacagttcgcc
aatgacttcggctttgaggaaaccgccgaccagcgcgccgccatccatgcggtgatccag
gacatgatctcgccccagcccatggaccgcctggtctgcggcgatgtgggctttggcaag
accgaagtcgccttgcgggccgcctttgtggcggtcaccggtggcaagcaggtggccctg
ctcgcccccaccaccttgctggccgagcagcactaccagaccctggccgaccgcttctcc
aagtggccgatcaaggtggcgctggtgtcgcgctttcgctcgggcaaggaggtcagcacg
accatcaagggcctggacgacggcaccgtcgacatcgtcgtcggcacccacaagctgctg
tctgaaaaaacccagttcaagaacctgggcctgctgatcatcgatgaagagcaccgcttt
ggcgtgcgccacaaagaggcgatgaaggccatgcgtgccgaggtcgatgtgcttacgctc
acggccaccccgatcccgcgcaccatgggcatggcgctcgatggcctgcgcgatctgtcg
gtgatcgccaccgcgccgcagcgccgccttgcgatcaagacctttgtgcgcagcgaaggc
accggcgtgatccgcgaagccgtgctgcgcgagctcaagcggggcggccagtgctacttt
ctgcacaacgaggtcgagaccatcgagaaccgccgccagaagctcgaagagatcctgccc
gaggcccgcattgccgtcgcccacggccagatgcccgagcgtgagctcgaacgcgtgatg
cgcgactttgtggcccagcgctacaacatcctgctgtgctcgaccatcatcgagaccggc
atcgacgtgcccagcgccaacaccatcatcatcagccgcgccgacaagtttggtctggcg
cagctgcaccagctgcgcggccgcgtgggccgcagctaccaccaggcctatgcctatctg
atggtgcccgacctggacggcctgaccaagcaggccgcgcaacgcctcgaagccatccag
cagatggaggagctgggcagcggcttttacctggccatgcatgacctggaaatccggggc
gccggcgaagtgctgggcgacaaccagagcggcaacatgatggagatcggctaccagctc
tacaacgagatgctgtccgaggccgtgcgcagcctgaaggaaggcaaggagcccgacctg
ctcagccccctgtctgccgccaccgacatcaacctgcacgcccccgcgctgctgcccaac
gactactgcggcgatgtgcacctgcgcctgtcgttctacaaaaagctggccaccgccaag
accagcgaccagatcgacaacctgctcgaagagatcgtggaccgcttcggcaagctgccg
ccgcaggcccagaccttggtcgatgtgcaccgcctgcgcgtgctctgcgagccctttggt
gtgcagaaggtcgatgccgcgcccggcgtgatcaatatcaccttctaccctaacccgccg
atcgagccgatgaccatcatcagcctgatccagaagaacaaggccatcaagctggccggc
aacgacaagctgcgcatcgagcgcgccctgcccgaggtcaaggaccgcgtgcagatggtg
cgcgatgtggtgcgcagcctgggcaagccggtggcggcagccgctgcggctacggcctga
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