Comamonas sp. B21-038: MJ205_14195
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Entry
MJ205_14195 CDS
T10658
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
comb Comamonas sp. B21-038
Pathway
comb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
comb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MJ205_14195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
comb03019
]
MJ205_14195
Enzymes [BR:
comb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MJ205_14195
Messenger RNA biogenesis [BR:
comb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MJ205_14195
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
PAC2
CMS1
Motif
Other DBs
NCBI-ProteinID:
ULR87606
LinkDB
All DBs
Position
complement(3072278..3073729)
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AA seq
483 aa
AA seq
DB search
MTNSFSNLHLAEPLAKAISEMGYASMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP
LLQRMMVHENSSASPARHPVRALVLLPTRELADQVAQQIAQFAKHTKLRSTVVFGGMDMK
PQTLELKKGVEILVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKKRTTLLFSATFSPEIKRLAGSYLQDPITIEVARPNETASTVEQRFYAASDDDKRRVL
TKVLRDRQIRQAFVFVNSKLGCSRLARTLEREGLRAAALHGDKSQDERLKALEAFKQGEV
DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSHADARH
VSDIEKLIKKKIDVENFALGEQPQRERFNDGNRERREREAGRERDSSRSRDRRAPREDEV
QDRRERYRPAPVSRDPFFDKPYEPKAAEPAAWDANAKPAPARGPGIKPRRKVAALFKPSP
ASE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgacaaattctttctccaaccttcatctggccgagcccctggccaaagccatctccgag
atgggctacgcatccatgacgcccattcaggcacaggccatccctgtggtcctgaccggc
aaagacgtcatgggtgccgcgcaaactggcacgggcaagacagctgctttctccctgccg
ctgctgcagcggatgatggtgcacgaaaacagctcggcatcgcccgcgcgccacccggtg
cgtgcgctggtgctgctgcccacccgtgagctggccgaccaggtcgcccagcagattgcc
cagttcgccaagcacaccaagctgcgcagcaccgtggtgttcggtggcatggacatgaag
ccccagacgctggagctgaaaaagggcgtcgaaattctggtggcaacgcccgggcgtctt
ctggaccatatcgaggccaagaacgcggtgctcaaccaggtcgaatatgtggtattggac
gaagccgaccgcatgctcgatatcggttttctgcccgatctgcagcgcatcctgtcctac
ctgcccaagaaacgcaccaccttgctgttctcggccacgttctcgcccgagatcaagcgc
ctggccggcagctacctgcaagacccgatcacgatcgaggtggcgcgtcccaacgaaacc
gcctctaccgtcgagcagcgtttctacgccgcctccgatgacgacaagcgccgcgtgctg
accaaggtgctgcgcgatcgccagatccgccaggcctttgtgttcgtcaacagcaagctg
ggctgctcgcgcctggcccgcaccttggagcgtgaaggtctgcgggcggctgcgctgcac
ggcgacaagagccaggacgagcgcctcaaggccctggaggccttcaagcagggtgaagtg
gatctgctggtctgtaccgatgtggccgcgcggggtctggacatcaaggatgtgcctgcc
gtcttcaactttgatgtgcccttcaatgcggaagactatgtgcaccggattggccgtacc
ggccgtgcaggcgcatcgggtctggccgtcaccttggtctcccacgcggatgcccggcat
gtgtcggatatcgaaaagctgatcaagaagaagatcgacgtggagaacttcgcgctgggc
gagcagcctcagcgcgagcgtttcaacgatggcaaccgcgagcgccgtgagcgtgaagca
ggccgagagcgcgacagctcccgcagccgcgaccgccgtgcgccccgtgaggacgaagtc
caggaccgccgcgagcgctaccgcccggcaccggtctcgcgcgaccccttctttgacaag
ccttacgagcccaaggcggccgagcctgcggcctgggatgcaaacgccaagccagcgccg
gcacgcggccccggcatcaaaccgcgccgcaaggtggctgcgctgttcaagccctcgcct
gcttctgaataa
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