Comamonas sp. B21-038: MJ205_23255
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Entry
MJ205_23255 CDS
T10658
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
comb Comamonas sp. B21-038
Pathway
comb00521
Streptomycin biosynthesis
comb00523
Polyketide sugar unit biosynthesis
comb00525
Acarbose and validamycin biosynthesis
comb00541
Biosynthesis of various nucleotide sugars
comb01100
Metabolic pathways
comb01110
Biosynthesis of secondary metabolites
comb01250
Biosynthesis of nucleotide sugars
Module
comb_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
comb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
MJ205_23255 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
MJ205_23255 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
MJ205_23255 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
MJ205_23255 (rfbB)
00525 Acarbose and validamycin biosynthesis
MJ205_23255 (rfbB)
Enzymes [BR:
comb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
MJ205_23255 (rfbB)
SSDB
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Paralog
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
3Beta_HSD
Motif
Other DBs
NCBI-ProteinID:
ULR89274
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All DBs
Position
5097580..5098635
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AA seq
351 aa
AA seq
DB search
MILVTGGAGFIGSNFVLDWLAGSDEPVVNLDKLTYAGNLHNLASLQGDSRHHFVHGDIGD
RALLDRLLAEHQPRAIVHFAAESHVDRSIHGPEDFIQTNVVGTLRLLEAARAYWSGLEGE
RKDGFRFLHVSTDEVYGSLEKDDPAFTETHNYEPNSPYSASKAASDHLVRAWFHTYGLPV
LTTNCSNNYGPYHFPEKLIPLMIVNALAGKHLPVYGDGMQIRDWLYVKDHCSAIRRVLEA
GRPGETYNVGGWNEMPNIEIVKHVCSLLDAQRPRADGRSYAEQISYVKDRPGHDRRYAID
ARKLEKELGWKPAETFDSGIRKTVQWYLDHQDWVAQVQSGDYKDWVSKQYA
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgattctcgtcaccggaggcgccggctttatcggctcgaattttgtgttggactggctg
gcgggttccgatgaaccggtggtcaatctcgacaagctgacctacgcgggtaatctgcat
aaccttgcaagcctgcagggcgacagccgccaccattttgtgcatggcgacatcggtgac
cgcgcactgctcgaccgcctgctggccgagcaccagccgcgtgccatcgtgcactttgcg
gccgagagccatgtggaccgctcgatccacggccccgaagatttcatccagaccaatgtg
gtcggtaccctgcgcctgcttgaagccgcgcgcgcctactggagtggcctcgaaggtgaa
cgcaaggacggtttccgctttctgcatgtctcgaccgacgaggtctacggcagcctggag
aaggacgacccggccttcaccgaaacccataactacgagcccaacagcccctacagcgcc
agcaaggccgccagcgaccacctggtgcgcgcctggttccatacctacggcctgccggtg
ctgaccaccaactgctcgaacaactacggcccctaccatttccccgagaagctgatcccg
ctgatgatcgtcaatgcgctggccggcaagcacctgccggtctatggcgacggcatgcag
atccgtgactggctctacgtcaaggaccactgcagcgccatccgccgcgtgctggaagcg
ggccgtccgggtgagacctacaacgtgggcggctggaacgagatgcccaatatcgagatc
gtcaagcatgtctgcagcctgctcgatgcgcagcgcccacgcgccgatggccgctcctac
gccgagcagatcagctatgtgaaggaccgccccggccatgaccgccgctatgcgatcgat
gcgcgcaagctggaaaaggagctgggctggaagcctgcagaaacctttgacagcggtatc
cgcaagaccgtgcagtggtacctggaccaccaggactgggtggcccaggtgcagtcgggt
gactacaaggactgggtcagcaaacagtacgcctga
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