Commensalibacter melissae ESL0284: GN303_06200
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Entry
GN303_06200 CDS
T06375
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
comm
Commensalibacter melissae ESL0284
Pathway
comm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
comm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GN303_06200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
comm03019
]
GN303_06200
03009 Ribosome biogenesis [BR:
comm03009
]
GN303_06200
Enzymes [BR:
comm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GN303_06200
Messenger RNA biogenesis [BR:
comm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GN303_06200
Ribosome biogenesis [BR:
comm03009
]
Prokaryotic type
rRNA processing factors
GN303_06200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Selenoprotein_S
Motif
Other DBs
NCBI-ProteinID:
QGT68866
LinkDB
All DBs
Position
1403224..1405734
Genome browser
AA seq
836 aa
AA seq
DB search
MNKKMLIDASYKEETRVVILDGNYIEGYDIENSAKKQIKGNIYLAKVIRIEPSLQAAFVD
YGGNRHGFLAFNEIHPDYYQIPVADRKKLLEIQELNKMEEEPNPNQELDPDQPSYYEDMV
HSHNSIIKNYKIQEVIHKRQIILVQVVKEERGNKGAALTTYLSLAGRYCVLMPNSLRNGG
ISRKITSPSERKRLKDIITELNIPSHMGMIIRTAGAQCPKADTLKDGEYLLHLWDEIRNL
TMKSIAPALIYEDSNLLKLTLRDNYTQDINEILIDGEDAWSQARDYMRALMPQNVHKLHL
WRDQKQSLFSYYKVENLIDQMLSPIVQLKSGGYLVINQTEALVAIDVNSGRSIKEKDLEE
TALRTNQEAANEIARQLRLRDLAGLIVIDFIDMENKKHNHIVERRLKSLLHKDRARIQIG
SISSFGLLEMTRQRLRPSIAEFAFTACSACNGTGIIRSDANISLQIIRQIDEEARKIKPG
ILTVSISSGEIALNILNQKRRWLADIEKKYKIKIEFTIDSTLSSHNVRFSSKTDSSLDME
PDDEILQSTPNVVQENLFVREIPIQSYLEYQTNSKTDYRQDEIENKVIDLKPESKVLRQN
SVSIEHKQDDTNLDSYSEQYKENKKTYSNSKDKKQPHHSRRNRYKRGQGKAQKNNDFTPI
LEAEPIPEPVINEKPEEITVTPTFVSIEIDADKSQNQHEETESLINQVIDNSDAVNKEDE
TSDNLEIKEEKPAPKRRRATKTTKSTGTTKTTRKRASSKKESKENETEEKSDNKEEKETK
IKKTTRARKTTTAKKTTLRKPKKTKEADENNEQPLIQPIVIDDTPTKTPRSGWWKR
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaaaatgctgattgatgccagctataaagaagaaacacgcgtcgtgatcctt
gatggcaattacatcgagggatatgatattgaaaattccgcaaagaaacaaataaaaggt
aatatctacctagccaaagtaatcagaattgaacccagtctacaggctgcttttgttgat
tatggtggaaatcgccatggttttttagcttttaatgaaattcaccctgattattatcaa
attcccgttgcagaccgaaaaaaactgctggaaatccaagaattaaataaaatggaggaa
gaaccaaatccgaatcaagaattggatcctgatcagccttcctattatgaagacatggtt
cattcccataatagcataatcaagaactataaaattcaggaagttattcataaaagacaa
attatcctcgttcaagtggtaaaagaggaacgtggaaataaaggcgcggcattaacaacc
tatctatctttggcaggacgctattgtgttttaatgccaaattccttacggaatggcgga
atttctagaaaaatcacttcaccatctgaaagaaaacggttgaaggatattatcactgaa
ctgaatatcccatcacatatgggaatgattatccgtactgcaggagcccaatgcccaaaa
gcagataccctaaaagatggggaatatctgcttcacttatgggatgaaatacgcaatcta
accatgaagtcgattgcgccagctcttatttatgaagattccaacttattgaaattgaca
ttacgtgataattatacacaagatattaatgagattttgatagatggcgaggatgcttgg
tctcaagcgagagattatatgcgtgcattgatgccgcaaaatgtacataagcttcatctg
tggagagatcaaaaacaatctcttttttcttattacaaggttgaaaatttgattgatcaa
atgctttccccgattgtccaactaaaatcagggggatatttagtcattaatcaaacagag
gctttggttgctattgatgtaaattcaggccgttcaatcaaggaaaaagatcttgaagaa
actgcattgagaaccaatcaggaagccgccaatgaaattgcacgccagttaaggttaaga
gatctggctggattaatcgttatcgatttcattgatatggaaaacaagaagcataatcat
attgttgaacgtcgtttgaaatctctacttcacaaagaccgtgcacgaattcagatcggt
tccatctcctcctttggcttactggaaatgacccgtcaaagattacgtccctctattgct
gaatttgccttcactgcatgttccgcttgtaatggaacaggtattattcgaagtgacgcc
aatatttctttacaaatcatcagacagattgatgaagaagctcgtaaaatcaaaccagga
attttaaccgtttccatttcatccggtgaaattgccttgaatattctcaaccaaaaacgc
agatggctggcggatattgaaaagaaatataaaatcaagattgaatttacaattgattca
accctgtcctctcataatgtccgtttttcaagcaaaactgattcctcacttgatatggaa
cctgatgatgaaatacttcaatctacaccaaatgtagttcaggagaatctttttgtcagg
gaaataccaatccaatcctatcttgaatatcagacaaattcaaaaacagattatagacaa
gatgagatagagaataaagttattgatctaaaacctgaatcaaaagtattacgtcaaaat
tctgtctccatagagcataaacaagacgatacaaatctcgattcttattcggaacaatat
aaggaaaacaaaaaaacatacagtaactccaaggataaaaaacaaccccatcattcccgt
cgtaaccgttataaaagaggacaaggtaaggctcaaaaaaataatgactttactcccatt
cttgaggctgaacctataccagaacctgtcatcaatgaaaaacctgaagaaataactgtg
actccaacctttgtttcaattgaaattgatgccgataaaagccagaatcagcatgaagaa
actgaatctttgataaatcaagttattgataattctgacgctgtaaataaagaggatgaa
acttcagataatctggaaataaaagaggaaaaacctgctccaaaacgtcgacgggccact
aaaaccaccaaatccacaggcaccaccaaaacgacacgtaaaagagcatcaagcaaaaaa
gagtcaaaagaaaacgaaaccgaggaaaaatcggataataaagaggaaaaggaaacgaag
attaaaaaaactaccagagcacgtaaaacaactacagccaaaaaaacaacgcttcgaaaa
cccaaaaaaaccaaggaagctgatgaaaataacgaacaacccttaattcagcccattgtc
atagatgatacaccgaccaaaacgccacgttccggctggtggaaacggtaa
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