Commensalibacter melissae ESL0284: GN303_06545
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Entry
GN303_06545 CDS
T06375
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
comm
Commensalibacter melissae ESL0284
Brite
KEGG Orthology (KO) [BR:
comm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GN303_06545 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
comm03021
]
GN303_06545 (rpoD)
Transcription machinery [BR:
comm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GN303_06545 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QGT68929
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Position
complement(1477418..1479373)
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AA seq
651 aa
AA seq
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MAVTTPSKIEENSSDNDTNVLDTQSAVVKRLISKGKERGYVTLDELNAILPQDKMSSEQI
EDVMAIFSEMNIQIIENEEEDADGEESENESDKDDSEETVATETNTGRTDDPVRMYLREM
GAVELLSREGEIAIAKRIEAGRNQMIGGLCESPLTFRAIIGWYEQLKTEEVLLRDIVDLE
ATENEYDQVELSNMDDSLSASLDHDTSDDSEEENEDGEETESGADEENNLSLAALEEKHK
DEILKHFSEIEKNYPKLYELQAQRLETIQAGEKLTSKFETKYEALRDKLIEEVQQIHLQS
NKIEFLVEQLKTVSKKLASLEGSMLRAAEKCKISRDDFLSKYHGHELNPDWLEAVGNLPG
KYWKLYVEKYGKEIGQYRDQIAELSQKVGLPVTEFRRVFSTVSYGERDASRAKKEMIEAN
LRLVISIAKKYTNCGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI
ADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPMPEELAEKLGMPLEKVRKVLKIAKE
PISLEIPVGDEEDSHLGDFIEDKSAVIPLDAAIQTNLREATTRVLASLTPREERVLRMRF
GIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLDDN
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcacaacaccatctaaaattgaagaaaattcaagtgataacgatacaaatgtt
ttggatacacaatccgctgttgtaaaacgtttgataagtaaagggaaagagcgcggttac
gtaactttagatgaattgaatgctatcttgccccaagataaaatgtcttctgaacagatt
gaagatgttatggctattttttcagaaatgaacatccagattatagagaatgaagaagag
gatgcggatggtgaagaatccgaaaatgagtcagataaagatgattcggaagaaacggtt
gcaactgaaacgaatacaggtcgaactgatgatcccgttaggatgtatttgcgtgaaatg
ggggcggtagagcttctttcgcgtgagggggaaattgccattgccaagcggattgaggct
ggacggaaccagatgattgggggattatgcgaaagccccctgacttttagggcaatcatt
gggtggtatgaacagttaaaaactgaagaggtgctgttaagggatattgttgatctggaa
gcaactgagaatgaatatgaccaggttgagttgtcaaatatggatgattctttgtccgct
tcgcttgatcatgatacttctgacgacagtgaggaggaaaatgaggatggtgaggaaacg
gagagtggcgcggatgaagaaaataatctttctcttgctgctctagaggaaaagcacaag
gacgagatcctcaaacatttcagtgaaattgaaaagaactatcccaaattgtatgagtta
caggctcagcgcttggaaacgattcaggccggtgaaaaacttaccagtaaatttgagaca
aaatatgaggctttaagggataagcttattgaagaggttcagcaaattcatttgcaaagt
aataaaatcgaatttcttgttgaacagttgaaaacggtttccaaaaagcttgccagctta
gagggaagtatgttgcgtgcagcggaaaaatgcaaaatttcccgtgatgactttttatca
aaatatcatggtcatgaattgaatcctgactggcttgaagcggttggaaatttacctggc
aaatactggaaactttacgttgaaaaatacggtaaagaaattggtcaatatcgtgatcaa
attgccgagctttctcaaaaggtgggattgccggtaacagaatttagacgggttttttct
acagtttcgtatggtgagcgagatgcgtctcgtgccaagaaagaaatgatcgaagcgaat
ttgcgcttggtcatttcaattgcaaagaaatatacgaattgtggattgcaatttttggat
ttgattcaagaaggcaatattggtttaatgaaagcggttgataaatttgaatatcgtcgg
ggatataaattttcaacctatgcaacttggtggattcgtcaggcaattacccgttcaatt
gccgatcaggctcgaacaatccgtattcctgttcatatgattgaaacaataaataaatta
gtgcggacttcacgacagatgctgcatgaaattggcagggaaccaatgccggaagagttg
gcggaaaaactcgggatgcctctggaaaaggtaagaaaagtattaaaaattgctaaggaa
cctatttcactggaaattccagtgggtgatgaagaggatagccatttaggggacttcatt
gaggataaaagtgctgttattccattggatgcggcaatccagacaaatttgcgagaggcg
acgacacgtgttctggcttccttgaccccaagggaagaacgcgttttgagaatgcgtttt
ggtattgggatgaatacagatcatacgctggaggaggttggacagcagtttaatgtcaca
cgtgaacgtattcgccagattgaggcaaaagccttgcgtaaattaaaacatccaagtcgt
agccgcaaattacggtcatttttggatgataattaa
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