Commensalibacter melissae ESL0284: GN303_06835
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Entry
GN303_06835 CDS
T06375
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
comm
Commensalibacter melissae ESL0284
Pathway
comm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
comm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GN303_06835 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
comm03021
]
GN303_06835 (rpoC)
03400 DNA repair and recombination proteins [BR:
comm03400
]
GN303_06835 (rpoC)
Enzymes [BR:
comm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GN303_06835 (rpoC)
Transcription machinery [BR:
comm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GN303_06835 (rpoC)
DNA repair and recombination proteins [BR:
comm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GN303_06835 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
BSH_YknX
PHZA_PHZB
Motif
Other DBs
NCBI-ProteinID:
QGT68985
LinkDB
All DBs
Position
complement(1532839..1537089)
Genome browser
AA seq
1416 aa
AA seq
DB search
MNELMKILGQTGQAMTFDQIKIQLASSEQIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIVCEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMIDMTLKDLERVLYFENYVVLEPGTSPLKQYSLLTEDQYLDAMEEYGHEGIEIG
IGAEAIKKILVNIDCDVEKVELRAELKETTSEVKRKKLVKRLKLVEAFAESGCRPEWMIM
SVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDIIEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPASGKPIIVPSQDIVLGLYYLSLEIPEFKLTPDQSEYDSEGHLIKKG
APLFANIGEIEHALSSRTLKLHDKIRCRFQTKNADGELVYQKVVTTAGRMLISQILPKHP
AINFSLINQQLTKKTISDIIDIVYRHCGQKECVIFADRMMGLGFSYAAKAGISFGKDDMI
IPDAKKELVAKTTEEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMMKKISHVE
PGQPINSVWMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLDYFT
STHGARKGLADTALKTANSGYLTRRLVDVAQDCIIVEPDCGTERGLVVRAVMDGGEVISS
LAERILGRTLAADVTDPATGKILYPRNTLLEEAEVEAIEKANVESVMIRSVLTCDSQVGV
CAHCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQKGAEQSMVESSR
DGKVKIINLNVVQNSQGFDIVMSRNCEIILLDDNGIERAHYRIPYGARLLVKNGSNVKRH
QKMAEWDPYTLPIITEKSGTIEYQDLIEGITLVERMDEVTGLSSKVVVDYKQTSKSRDLR
PRLQLKDSNGEVMKLGNGNDARYFLSPDSLLSVENGAQVNAGDVLARIPREGSKTRDITG
GLPRVAELFEARRPKDHAIIAENDGVVEFGKDYKAKRRIVVRNEDAGEETEYLIPKGKHI
SVQEGDFVRKGDPLVDGPRVPHDILKVLGIEALSDYLIDEIQSVYRLQGVKINDKHIEVI
VRQMLQKIEVTDPGDTTYLIGETVDRLEFEQENIKRMNANERPATGSPVLQGITKAALQT
KSFISAASFQETTRVLTEAASAGKVDTLMGLKENVIVGRLVPAGTGSVMNRFRAMAYSRD
RQRILDANKMNGEAEIELSSVTSENNEIKDVTQVTE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaacttatgaaaattcttggtcagactggccaagcaatgacgtttgatcagatt
aaaattcaattggcctcgtctgaacagatacggtcttggtcttatggtgaagtgaaaaag
ccagagacaattaattatcgtacttttaaaccagaacgggatggattgttttgtgcgcgc
attttcggtccgatcaaggattatgaatgtctttgtggtaaatataaacggatgaaattc
cgtggcatagtatgtgaaaaatgcggtgttgaagttacgcttgccaaagtgcgtcgtgaa
cgtatggggcatattgagcttgcaagcccggttgcacatatttggtttttgaaatctctt
ccaagtcgtatcggattaatgatcgatatgactttgaaagatctcgagagggttttgtat
tttgaaaattatgttgttttagaacccgggacatcgccattaaaacaatatagcctgctg
actgaggatcaatatcttgatgctatggaagaatatgggcatgagggtattgaaataggg
attggtgcggaagcgattaagaaaattctggtcaatatcgattgtgatgttgaaaaggta
gaattacgcgccgaattaaaagaaacgacctctgaagtcaaacgtaagaagcttgtaaaa
cgtttaaaactagtggaagcttttgcagaaagtggttgtcgtcctgaatggatgatcatg
agtgttgtaccagtcattccacctgaattaagaccgcttgtcccattggacgggggccgt
tttgctacatcagatctcaatgatttgtaccgtcgtgtcatcaaccgtaataaccggttg
aaacggttaatggaattgcgtgcaccggatattatcattcgtaacgaaaaacgtatgttg
caggaatctgttgatgcgttgtttgataatggacgtagaggacgggcaattacaggggcg
aataaacgaccattaaaatccttggcggatatgcttaaaggaaaacagggacgtttccgt
caaaacttgcttggtaaacgtgtggattattctggacgttcagtgattgtggttggtcct
gaactgaaattgcatcaatgcggtttgcctaaaaaaatggcattggaattgttcaagcca
tttatatattccaagcttgaaaaatatgggcatgcgacgaccattaaggcagctaagcgt
atggttgagaaagaacgcccagaagtttgggatattattgaagaggttattcgtgaacat
cctgtcatgcttaaccgtgcaccaactttacaccgcttgggtattcaagctttcgaacct
gttttgattgagggtaaagcgattcagttgcatccattggtatgtactgccttcaatgca
gattttgacggtgatcagatggcggttcatgtgccattgagtttggaagcgcagctcgag
gcacgtgttttgatgatgtccacaaataatattcttagtcctgctagtggtaagcctatt
attgttccatctcaggatattgtattggggctgtattatctgagtctggaaattcctgaa
tttaaattaactccagatcaatccgaatatgattctgaaggtcatcttattaaaaagggt
gcacctctttttgcgaatattggtgagattgaacatgcattgtcatccagaaccttgaag
cttcacgataaaattcgttgtcgttttcaaacaaagaatgcggatggtgagctagtttat
caaaaggtagtgacaaccgcaggtagaatgttgatttcacagattcttccaaaacatcca
gcaatcaatttttcattgatcaatcaacaattaacgaaaaagacaatttcagatattatc
gatattgtctatcgtcattgtggtcagaaggaatgtgtgatttttgcggatcgtatgatg
ggactaggattctcttacgctgctaaagctggtatttcatttggtaaggatgatatgatc
attcctgatgcgaaaaaggaactggtcgccaagacaaccgaagaggttaaggagtttgaa
cagcaatatcaggacggtttgattacagcaggagagcgttataacaaggttgttgatgcc
tggtcacgttgtacggatgaggttcaggcagcgatgatgaaaaagatttcacatgtagag
cctggccaacccatcaattctgtctggatgatgagtcattctggagctcgtgggtcccca
gcccagatgaagcagttggccggtatgcgtggtctgatggcgaaaccgtcaggtgaaatt
attgaacaacctattattgccaatttcaaggaaggtctttctgttcttgattattttacg
tcgactcatggtgcacgtaaaggattggctgatacggccctgaaaaccgcaaactctgga
tatcttactcgtcgtctggttgacgttgctcaggattgcattattgttgagccagattgt
ggaacagaacgcggattggttgttcgtgcggtaatggatggtggtgaggttatttcttca
ctagcagaacgtattcttggacgtacattggcagcagatgtaacggatccagcaactggt
aaaattctttatcctcgtaacacgcttttggaggaggccgaggttgaggcaatcgaaaag
gccaatgttgaaagtgtgatgattcgttctgttttaacctgtgacagtcaggttggcgta
tgcgctcattgttatggtcgtgatcttgctcgcggaactcctgttaatataggagaggct
gtcggtgttattgctgctcaatcaattggtgagcctgggactcagttgacaatgcgtaca
tttcatattggtggtgcagcacaaaaaggtgcagaacaatctatggttgaatcctcccgc
gatggcaaggtcaagattataaatctgaatgttgttcaaaacagtcagggatttgacatt
gtcatgtccagaaactgtgaaattatcttgttggatgataatggaattgaacgcgctcat
taccgtattccctatggtgcacgtttgcttgttaaaaatggatcgaatgtcaagcgccat
cagaaaatggcagaatgggatccatatactttacctattattactgaaaaatcaggtaca
attgagtatcaggatctgattgaaggtattacactggttgaacggatggatgaagtcacg
ggtctttcttcaaaagttgttgttgactataagcaaacaagtaaatctcgtgatttgaga
ccacgcttgcagttaaaggattcaaatggggaagtcatgaagttggggaacggtaacgac
gcacgttacttcttgtctccagattccctgctttctgtggaaaatggggcgcaggttaat
gccggtgatgtcttggctcgtattccaagagaaggttccaagacgcgtgatattaccggg
ggtcttccacgggtggctgaacttttcgaggcacgtcgtccgaaagatcatgcgattatt
gccgaaaatgatggtgtggttgaattcggaaaagactataaggcaaaacgtcggatcgtt
gtacgtaatgaggatgctggtgaagaaacagaatatttgattcctaaaggaaaacatatt
tctgtacaggaaggtgattttgtccgtaagggcgatcctcttgttgatggaccacgtgtt
cctcatgatattttaaaggttcttggaattgaagccttgtcggattatctgattgatgaa
attcagagtgtttatcgtcttcagggtgtgaagatcaatgataaacatattgaagtgatc
gttcgtcaaatgctgcagaagattgaggtgacggatccaggtgatacgacttatttaatt
ggtgaaactgtagatcgcttggaatttgaacaagaaaatatcaaacggatgaacgccaac
gagcgtccggcaactggttcaccagttttacagggtatcaccaaagctgcgttacaaacc
aaatcctttatttcagcggcttccttccaggaaacaactcgtgtattgacagaggccgca
tctgcggggaaggttgataccttgatgggattaaaggagaatgtaatcgtcggacgtctt
gttcctgcaggaacgggtagtgttatgaacagattccgtgccatggcctattcaagagat
agacaacgaattctggatgcaaataagatgaatggtgaagcggaaattgaactttcttct
gttacatcagaaaataatgaaataaaggacgtgactcaggtcactgaataa
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