Cellulophaga omnivescoria: PBN93_02610
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Entry
PBN93_02610 CDS
T08738
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
comn
Cellulophaga omnivescoria
Pathway
comn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
comn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PBN93_02610 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
comn03021
]
PBN93_02610 (rpoB)
03400 DNA repair and recombination proteins [BR:
comn03400
]
PBN93_02610 (rpoB)
Enzymes [BR:
comn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PBN93_02610 (rpoB)
Transcription machinery [BR:
comn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PBN93_02610 (rpoB)
DNA repair and recombination proteins [BR:
comn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PBN93_02610 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
RnfC_N
AGA2
Motif
Other DBs
NCBI-ProteinID:
WBU89921
LinkDB
All DBs
Position
complement(605697..609506)
Genome browser
AA seq
1269 aa
AA seq
DB search
MFTKQTQRINFASAKNIPDYPDFLDIQIKSFQDFFQLETKSDERGDEGLYNTFLENFPIT
DTRNQFVLEFLDYFIDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINGVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLSEEIKVSNAGLKKVLGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTVLEKEHIAEIMEADVKTILLHKENNA
QSDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLQLDIGMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLAVYAK
VNPMGFLETPYRKVTNGVVDTEEYAYLSAEEEEGMKISQANIPLKEDGEIDVDKVIAREE
GDFPVVDPAEINYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPESPI
VGTGLERQVASDSRVLINAEGDGVVEYVDSQKVTIKYDRTEEERLVSFEEDSKTYNLVKF
RKTNQGTSINLKPIVEKGDKVKKGQVLCEGYATQLGELALGRNMKVAFMPWKGYNFEDAI
VISEKVVREDIFTSIHIDEYSLEVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAE
VKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIGKKLFSR
SIKDKRTRVEDKDAINKLELEYEVKFQQLKDILVEKLFTLVNGKTSQGVLNDLGEEVLPK
GKKYSMKMLNSVDDFAHLVGGSWTVDKDLNAMVADLIHNYKIKLNDLQGNLRRDKFTISV
GDELPPGIMKLAKVYVAKKRKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGLKLGKKYATPIFDGATLEQINGYTDEAGIPRFGHTYL
YDGGTGKRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASATLREILTVKSDDVIGRAKTYESIVKGETMPEPGLPESFNVLMHELKG
LGLDIRLEE
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgttcacaaaacagactcaaagaataaattttgcatcagctaagaatattccagattac
ccggatttcttggacattcagattaaatcatttcaggatttcttccaacttgaaactaaa
tctgatgaaagaggcgacgaaggtttgtataataccttcttggaaaactttccaattact
gacacaagaaatcaattcgtattagagtttcttgattactttattgatccacctagatat
tctattcaagaatgtatagaaagaggattaacctatagtgttccgctaaaggcaaggcta
aaactttattgtacggacccagaacatgaagattttgaaactatagtacaagatgtgtac
ttaggaacaattccttatatgacaccaagtggtacatttgttattaatggtgctgagcgt
gttgttgtatctcaattacaccgttctccaggggttttcttcggacagtctttccatgct
aacggtactaaattgtattctgcaagagtaattccttttaaaggttcttggattgaattt
gcaacagatatcaatggcgttatgtacgcatatattgatagaaagaaaaaattaccagta
acaaccttgtttagagctattggctttgaacgtgataaggatattttggaaatctttgat
ttatctgaagaaattaaagtttcaaatgctggacttaaaaaagtattaggacgtaaactt
gctgctagagtattaaatacatggcatgaagatttcgtagatgaggatacaggtgaggtt
gtttctattgaaagaaacgaaattgtattagatagagatactgttcttgaaaaagaacac
attgccgaaattatggaggcagatgtaaaaactattctattacataaagaaaataatgca
cagtctgactatgcaattattcataatacattacaaaaggatccaacaaactcagaaaaa
gaggctgttgagcatatttatagacaattgcgtaatgctgaaccgccagatgaggaaaca
gcacgtggtattatagataaattattcttctctgatcaacgttacaacttaggtgaagta
ggtcgttatagaatgaataaaaagttacagttagatattggaatggacaagcaagtcttg
actaaagaagatatcattactataattaagtatttaatagagcttataaactctaaggca
gagattgatgatattgatcacttatctaaccgtcgtgtacgtacagttggtgaacaatta
tctcaacagtttggtgtaggtcttgctcgtatggctagaactattcgtgaacgtatgaat
gttagagataatgaggtgtttacacctatagatttgattaatgcaaagacattgtcttct
gttattaattctttctttggtactaaccagctatctcagtttatggatcaaactaatcca
ttagcagaaataacacacaagcgtagattatctgcacttgggccaggaggtttatctaga
gagagagcaggttttgaggtgcgtgatgttcactatacacactacggaagactttgccct
attgaaactcctgaaggaccaaatattggacttatatcatctcttgcagtttatgcaaaa
gttaatccaatgggcttcttagaaactccttaccgtaaagtaactaatggtgttgtagat
actgaagagtatgcatacctaagtgctgaggaagaagagggaatgaaaatatctcaagcc
aacattcctttaaaagaagatggtgaaattgatgttgacaaggttattgctcgtgaagaa
ggtgatttcccagttgtagatcctgcagaaattaattatacagatgttgctccaaatcaa
attgcatcaatatctgcatctttaattcctttcttagaacatgatgatgccaaccgtgca
ttgatgggatctaacatgatgcgtcaggcagttccattattaagaccagaatctccaatt
gttggtactggtttagaacgtcaggtagcatcagactctagagttttaattaatgcagaa
ggagatggtgttgttgagtatgtagattctcaaaaagtcactattaagtatgatagaaca
gaagaagaacgtttagttagttttgaggaagattctaaaacatataacttggttaagttt
agaaaaactaaccaaggtacaagtattaaccttaagcctattgtagaaaaaggagataag
gttaaaaaaggtcaagtattatgtgaaggttatgctacacaattgggtgaattagcctta
ggtagaaatatgaaagtagcctttatgccttggaaagggtataactttgaggatgcaatt
gtaatttcagaaaaagtagtacgtgaagatatctttacatctatacacattgatgagtac
tctttagaggttagagataccaaattaggtgcagaagaactaacacatgatattccaaac
gtttctgaagaggctactaaagacttagatgaaaacggaatgatccgtattggtgcagaa
gttaaacctggagatattttaataggtaagattactccaaaaggagagtcagaccctaca
ccagaagaaaaattacttcgtgcaatatttggagataaagcaggagacgttaaagatgca
tctttaaaagcatcaccatcattaagaggtgttgtaataggtaagaaattattctctaga
tctattaaagataaacgtactcgtgtagaagataaagatgctattaataagttagagcta
gaatacgaagttaaattccaacagcttaaagatatattagtagaaaaactatttacatta
gttaatggtaaaacatcacaaggtgtacttaatgatttaggagaagaagttcttccaaaa
ggtaaaaagtattctatgaagatgttaaactctgttgatgattttgcccaccttgtaggt
ggtagctggacagtagataaggatcttaatgccatggttgcggatttaattcacaactat
aaaattaagcttaacgatcttcaaggaaacttaagaagagataaatttactatttctgtt
ggtgatgagttgcctccaggaataatgaaattagctaaggtttatgttgctaaaaaacgt
aaacttaaagtaggtgataaaatggccggtcgtcacggtaacaaaggtattgttgctcgt
atagtacgtcatgaagatatgccattcttagaagacggaactccagtagatatcgtatta
aacccattaggtgtaccatctcgtatgaacattgggcaaatatatgagactgtattaggt
tgggccggtttaaaattaggcaaaaagtatgcaactcctatttttgatggtgctacatta
gaacaaattaacggatacacagatgaagcaggtataccacgttttggtcatacttattta
tatgatggtggaaccggtaaacgttttgatcaaccagcaactgtaggtgttatttacatg
cttaaattagggcatatggtagatgataaaatgcacgctcgttctataggaccttactct
ttaattacacaacagccattaggtggtaaagcacaatttggtggtcagcgttttggagaa
atggaagtatgggcattagaagcatatggtgcgtctgcaacactaagagaaatattaaca
gttaaatctgatgatgttattggtagagctaaaacgtatgagtctattgtaaaaggcgaa
acaatgccagaacctggtttaccagaatctttcaatgtattaatgcatgaacttaaggga
ttaggtttagatattagattggaagaataa
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integrated database retrieval system
