Cellulophaga omnivescoria: PBN93_05855
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Entry
PBN93_05855 CDS
T08738
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
comn
Cellulophaga omnivescoria
Pathway
comn03410
Base excision repair
comn03430
Mismatch repair
comn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
comn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PBN93_05855 (recJ)
03430 Mismatch repair
PBN93_05855 (recJ)
03440 Homologous recombination
PBN93_05855 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
comn03400
]
PBN93_05855 (recJ)
DNA repair and recombination proteins [BR:
comn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PBN93_05855 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PBN93_05855 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PBN93_05855 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WBU90536
LinkDB
All DBs
Position
1312347..1314035
Genome browser
AA seq
562 aa
AA seq
DB search
MRWTIKPKPDAAKVAELQNALQVDEIVAKLLLQRGITTFEEAKKYFRPQLSDLHDPYLLK
DMDLAIARIEQAIANEENIMVFGDYDVDGTTSVALVSSYLQSYYPNVTTYIPDRYKEGYG
VSYAGIDYADDNDISLIIALDCGVKAVDKVAYAKEKGVDFIICDHHRPGATLPNAVAVLD
AKRADCNYPYDELCGCGVGFKLIQALGSKRGQTIEDLVPYLDLVATAIGADIVPITGENR
VLAYFGLKVINSTPRAGFKAIINQIKKDVLTITDVVFVIAPRINAAGRMVHGLHAVNLLT
ETNLEQAEEFAAAIEQYNADRRELDQEITKEALVQITDNKEDKHFTSVVYNENWHKGVIG
IVASRLTETYYRPTLVFTKSGEKLAASARSVKGFDVYNALEACAEHIEQFGGHKYAAGLT
LSEAQYDGFKTAFEKVVAETIDPNLLTPEITIDAELNFNEISPKLMRIIKQMEPFGPGNM
SPVFMAENLQDTGYAKGVGQEEAHLKLAAVQNGSSQIGAIGFNLGDKLSLVQNKKPFSAV
FSLDENEWKGNVSLQLKLRDIR
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggaccataaaacctaaacctgatgctgcaaaagtagccgaactacaaaatgca
ttacaggttgatgaaattgtggctaaactattattacagcgcggtataacaacttttgaa
gaggctaaaaaatactttagaccacaactatcagatttacacgacccatatttattaaaa
gatatggatttggctattgctcgcatagagcaagctattgccaatgaagaaaatattatg
gtttttggcgattatgatgtagatggcacaacttctgttgcgttagtatcatcttattta
caaagctactacccaaatgttactacttatattccagataggtataaagaaggttatggt
gtgtcttatgctggtattgactatgcagatgataatgatattagtctaattattgcatta
gattgtggtgtaaaagcggtagataaagtagcttatgcaaaagaaaaaggtgtagatttt
attatttgtgaccaccacaggcctggtgctacattaccaaatgctgttgctgttttagat
gccaaaagagccgattgcaattacccgtatgacgagctttgtggttgtggtgttggtttt
aaattaatacaagctttaggtagcaaaagaggacaaactatagaggatttagtgccttat
ttagacttggttgctacggcaattggtgcagatattgtgcctattactggcgaaaataga
gtgctagcttattttggattaaaggtaataaatagtactcctagagcaggttttaaagct
attataaatcagataaaaaaagatgtacttaccattacagatgttgtttttgtaattgca
ccgcgtataaatgctgcgggacgtatggtacacggtttgcacgctgttaatttactaacc
gaaacaaatttggaacaggcagaagaatttgctgctgccatagaacagtacaatgcagat
aggcgagaactagaccaagaaattaccaaagaagctttagtacaaattacagacaacaaa
gaagataaacattttacctctgtagtttataatgaaaattggcacaaaggtgttattggg
attgtagcatctagacttactgaaacctattacagacctactttggtttttactaaaagt
ggagaaaaattagctgcatctgcacgctctgtaaaagggtttgatgtctacaacgccctt
gaagcttgcgcagaacacatagaacagtttggaggccataaatatgctgctggtttaacc
ttatctgaagcacagtatgatggttttaaaacagcgtttgaaaaagtagttgcagaaact
atagaccctaatcttttaactccagaaattactatagatgcagagcttaattttaatgaa
ataagtcctaaattaatgcgaattattaaacaaatggaaccttttggtcctggtaatatg
tcgcccgtatttatggcagaaaacctacaagacacaggttatgcaaaaggagtagggcaa
gaagaagcgcatttaaaattagctgctgtacaaaatggttctagccaaattggagctatt
ggttttaatttaggtgacaaattatctttagtacaaaacaaaaagccatttagcgctgtc
ttttctttagatgaaaatgaatggaaaggcaatgtaagtctacaattaaagcttagagat
attagataa
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