Cellulophaga omnivescoria: PBN93_09075
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Entry
PBN93_09075 CDS
T08738
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
comn
Cellulophaga omnivescoria
Pathway
comn02020
Two-component system
comn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
comn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PBN93_09075 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PBN93_09075 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
comn03021
]
PBN93_09075 (rpoN)
Transcription machinery [BR:
comn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PBN93_09075 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
NES_C_h
RelE
SurA_N_3
HTH_IclR
DUF6290
Motif
Other DBs
NCBI-ProteinID:
WBU88024
LinkDB
All DBs
Position
complement(2040043..2041494)
Genome browser
AA seq
483 aa
AA seq
DB search
MLKQHLQFKLSQKLSPQQIQLMKLIQLPTQAFEQRLKQELEENPALESGKEETETIEDEY
DDLYDNDTEKIEAEDINIDEYLSDDEVPDYRTQANNYSADDDEKSIPYAAGTSFHQHLMT
QLNTVYLDDKDWAIAEFLIGSVDESGYIRRPITDIMDDLAFTQNVFAEEADIIKVLNLVQ
ELDPPGVAARSLEECLIIQLSRKEQTPAIELAIQILEKSFDQFTKKHYKKLLQKHNITEN
ELKEAISEIEKLNPKPGGSYAGNTRIIEHIVPDFSIKITDGELELTLNGRNAPELHVSRQ
YNNMLEGYKNSKTKSKSQKDTVFFIKQKLDAAKWFIDAIKQRQQTLYVTMSAIMNYQKEY
FLTGDERKLRPMILKDIADTIGMDVSTVSRVANSKYVDTPYGTKLVKEYFSESMKNEQGE
DVSTKEIKKILENVISEEEKRKPLTDDKLAAILKEKGYPIARRTVAKYREQLNIPVARLR
KQI
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaacaacacctacaatttaagttatcacaaaagttgtctccacagcagatacag
cttatgaagttaattcaacttcccactcaagcttttgaacaacgattaaaacaagagtta
gaagaaaatccagcattagagagcggcaaagaagaaaccgaaactattgaggatgaatat
gacgatttgtacgacaatgataccgaaaaaattgaagcagaagatattaatatagacgaa
tatctttctgatgacgaagtacctgactaccgtacacaggcaaataattacagtgcagat
gatgatgaaaagagtattccttatgcagcaggaacctcttttcatcaacatttaatgaca
caattaaataccgtttatttagatgataaagactgggcaattgccgagtttttaattggt
agtgttgatgaaagcggttatatacgcagaccaattacagatattatggacgatctggca
tttacacaaaatgtatttgcagaagaagcagacataattaaagtactaaatttagtacaa
gaattagatccgcctggtgtggccgcaagatctttagaagaatgcttaattatacagctt
tctagaaaagaacagacgcctgctattgaattagcaattcaaatactagaaaagtctttt
gatcagtttactaaaaagcactacaaaaagcttctgcaaaaacacaacattacagaaaat
gaactaaaagaagctatttctgaaattgaaaaattaaatccaaagccaggaggctcatat
gctggtaatactagaataatagaacatattgtaccagatttttcaattaaaattacagac
ggagagctagaacttactctaaacggaagaaatgctcctgaattacacgtatctagacag
tataataatatgctagaaggctacaaaaattctaaaacaaaatctaaatcacagaaagac
accgttttttttataaaacaaaaactagatgctgccaagtggtttatagacgctattaaa
caaaggcaacaaacgctttatgtaacaatgagcgctattatgaactaccaaaaagaatat
tttttaaccggagatgagcggaagcttagaccaatgattttaaaagatattgcagatacc
attggcatggatgtatccactgtttctagagtagccaacagcaagtatgtagacacccct
tacggaacaaaattagtaaaagaatacttttctgagtctatgaaaaatgaacaaggagaa
gatgtgtccacaaaagaaatcaaaaagattttagaaaatgttattagtgaggaagaaaaa
agaaaacctttaactgatgataaattagctgcaatattaaaagaaaaaggatatccaatt
gcgagacgtaccgttgctaaatacagagaacaactaaatatacctgttgctaggttaaga
aagcaaatataa
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