Cellulophaga omnivescoria: PBN93_11400
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Entry
PBN93_11400 CDS
T08738
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
comn
Cellulophaga omnivescoria
Brite
KEGG Orthology (KO) [BR:
comn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
comn03032
]
PBN93_11400 (gyrB)
03400 DNA repair and recombination proteins [BR:
comn03400
]
PBN93_11400 (gyrB)
Enzymes [BR:
comn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PBN93_11400 (gyrB)
DNA replication proteins [BR:
comn03032
]
Prokaryotic type
DNA Topoisomerases
PBN93_11400 (gyrB)
DNA repair and recombination proteins [BR:
comn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PBN93_11400 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Toprim_4
HATPase_c_3
GyrB_hook
Motif
Other DBs
NCBI-ProteinID:
WBU88477
LinkDB
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Position
2538268..2540208
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AA seq
646 aa
AA seq
DB search
MSEEANKNNYSADSIQALEGMEHVRMRPSMYIGDVGVRGLHHLVYEVVDNSIDEAMGGHC
DNISVVINEDGSITTKDNGRGIPVGLHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGLH
GVGVSCVNALSNNLKATVYREGKIWEQEYERGKALYPVKSIGETEETGTIVTFYPDDTIF
TQTTEYNYETLSNRMRELAYLNKGVTISITDKRVKDEKGEFLSEVFYSEEGLKEFIKFLD
GNREQLIRDVVSMEGEKNGIPVEVAMVYNTSYSENLHSYVNNINTHEGGTHLSGFRRGLT
STLKKYADASGMLDKLKFEIQGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNREVSSAVS
QAVSEMLTNYLEENPDDAKVIVQKVILAAQARHAATKAREMVQRKTVMSIGGLPGKLSDC
SEQDATKCEVFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIKNI
YTALGVTIGTEEDSKALNLEKLRYHKVVIMCDADVDGSHIETLILTFFFRFMRELIEGGH
VYIATPPLYLVKKGTKKRYAWNDKERDEIAESFNGSVGIQRYKGLGEMNAEQLWDTTMNP
DFRTLRQVTIDNATESDRIFSMLMGDEVPPRREFIEKNAVYANIDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagaagcaaacaagaataattattcagctgacagtattcaggccctagagggt
atggagcacgtacgtatgcgtccttctatgtatattggggatgttggtgtaagaggttta
caccacttagtatatgaggtagtagataactctattgatgaggcaatggggggccattgt
gataatataagtgtagttataaatgaagacggctctattacaaccaaagataatggtaga
ggtataccagtaggactgcataaaaaagaaggcgtatctgcattacaggtagtaatgact
aagattggtgctggtggtaagtttgataaagattcatacaaagtatctggtggtttacac
ggtgtaggtgtatcttgtgtaaacgcattatctaataatttaaaagctactgtttacaga
gaaggtaaaatatgggagcaagagtatgaaagaggtaaggctttatatccggtaaaaagt
attggagaaacagaggaaacaggtactatagttactttttacccagatgatactatattt
acacaaactacagagtataattatgaaacgctttctaacagaatgcgagagttggcttac
cttaataagggagttacaattagcattacagataagagagttaaagatgaaaagggagag
tttttatctgaagttttttactctgaagaaggactaaaagaatttattaagtttttagac
ggtaacagagaacaactaatacgtgatgttgtttcaatggaaggtgaaaaaaacggaatt
cctgttgaggttgcaatggtgtacaatacatcatattcagaaaatcttcattcttacgta
aataatattaatacacatgaaggtggtacacacctttcaggttttagaagaggtttaaca
tcaaccttaaaaaagtatgcagatgcatctggaatgttagacaaattaaagtttgagatt
cagggagatgattttagagaaggtttaacggctattgtgtctgttaaagttgcagaacct
cagtttgaagggcaaacaaaaactaaattaggtaacagagaagtttcttctgcagtgagc
caagctgtatcagaaatgcttaccaactatttagaagaaaacccagatgatgctaaggta
attgtacaaaaagttattttggcagcgcaagcacgtcatgcggctacaaaagcccgtgaa
atggtacagcgtaaaacggtaatgagtataggtggtttacctgggaaattatcagactgt
tctgagcaagatgctacaaaatgcgaagtattccttgtagagggagattcggcgggtggt
actgctaaacaaggtagggacagaaactttcaggcaatattaccgcttcgtggtaaaatc
ttaaatgttgaaaaagcaatgcaacataaggtttttgaaaacgaagaaataaaaaatatt
tacacagctttaggtgttactattggtacagaagaagatagtaaagccttaaacttagaa
aaattaagataccataaagtagttattatgtgtgatgccgatgtagatggtagccacatt
gaaactttaatccttacattcttcttccgttttatgagggagttaatagaaggcggtcac
gtttatatagcaaccccacctttatacttggtaaaaaagggaacaaaaaaacgttatgct
tggaatgataaagaacgagatgagatagcagaaagctttaatggtagtgttggtatacaa
agatataagggtcttggagagatgaatgcagaacaattatgggatacaacaatgaatcct
gactttagaacgcttcgccaagtaactatagataacgccacagagtcagatagaatattt
tctatgttaatgggtgatgaagtaccgcctagaagagaatttatagagaaaaatgctgtt
tatgctaacattgatgcataa
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