Cellulophaga omnivescoria: PBN93_11510
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Entry
PBN93_11510 CDS
T08738
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
comn
Cellulophaga omnivescoria
Pathway
comn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
comn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBN93_11510 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
comn03021
]
PBN93_11510 (rho)
03019 Messenger RNA biogenesis [BR:
comn03019
]
PBN93_11510 (rho)
Transcription machinery [BR:
comn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PBN93_11510 (rho)
Messenger RNA biogenesis [BR:
comn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PBN93_11510 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
OB_RNB
NACHT
DUF3527
Motif
Other DBs
NCBI-ProteinID:
WBU88497
LinkDB
All DBs
Position
complement(2561956..2563599)
Genome browser
AA seq
547 aa
AA seq
DB search
MFEISDLKAKKLPELQDIAKGLNVPKFKTLKKLDLVYQILDVQAANPKAVEEVVVKEPKK
PDAKPVAKAKPAEKPKPRPVKRERVLREKPKPKAKEVTTTEETTKEPVAKKVPSTKNTKP
AASPEKKSPQRNSPQQGQQKNNNQHKNKKPQHQKNQRDKSNFDKDLKNRYREPEFEFDSI
IASEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKTGDTVLGNVRPPKEGE
KYFPLIKVNKINGIDPQVVRDRVSFEHLTPLFPQEKFNLADKQSKISTRIIDLFSPIGKG
QRGMIVAQPKTGKTMLLKDIANAIAANHPEVYQIILLIDERPEEVTDMQRNVRGEVVAST
FDKEAVEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGGVDA
NALHKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKISN
RRIFPAIDLTSSSTRRDDLLLDDNTIQRMWILRKYLADMNPVEAMEFIEQRIKQTKNNEE
FLLTMNQ
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagatttccgatttaaaagcaaaaaagcttcctgagttacaggatattgcaaaa
ggtttaaatgttcctaagtttaaaacattaaagaagctagatttggtttaccaaatacta
gatgtacaagcagcaaaccctaaagcagtagaagaagttgttgttaaagaacctaaaaaa
ccagatgcaaaacctgttgcaaaagccaaacctgcagaaaaaccaaaaccacgccctgtt
aaaagagaacgtgttttaagagaaaaaccaaagccaaaagctaaagaagttaccactaca
gaagaaactactaaagaacctgtagctaaaaaagtaccttctacaaaaaatacaaaacct
gcagctagtccagaaaaaaaatcacctcaaagaaattcaccacaacaagggcagcaaaaa
aataacaatcagcacaaaaataaaaaaccgcagcaccaaaaaaatcaaagagataaaagt
aactttgataaggacttaaaaaacaggtacagagaacctgaatttgagtttgacagcatt
attgccagtgaaggtgttttggatattatgcaagatggttatggttttttaagatcttct
gattataactacctttcttctcctgatgatatttatgtatcacaatcacaaattagatta
tttggattaaaaacaggagatacagtattaggaaacgtacgcccaccaaaagaaggtgaa
aaatactttccgctaattaaggtaaataaaattaatggtatagacccacaagttgtaaga
gaccgcgtgtcttttgagcatttaacaccattatttcctcaagaaaaatttaaccttgca
gacaagcaaagtaaaatttctaccagaattatagatttgttttctccaattggtaaagga
caacgtggtatgattgttgcccagccaaaaactggtaaaacaatgctattaaaagatatt
gcaaacgctatagctgcaaatcacccagaagtttatcaaattattttattgatagatgaa
cgcccagaagaggttacagatatgcaacgtaatgtacgtggtgaggttgtagcgtctact
tttgataaagaagctgtagaacatgtacgtgttgcaaatattgttttagaaaaagcgaaa
agactagtagaatgtggccatgatgttgttattttactagattctattacgcgtttggca
agagcatacaacacggtacaacctgcatctggtaaagtattaagtggtggtgtagatgca
aatgcactacacaaaccaaaacgtttctttggtgctgcacgtaatatagagaatggtggt
tctttatccattattgcaaccgcactaactgaaacaggctctaaaatggatgaagtaatc
tttgaagaatttaaaggtactggtaatatggaacttcagttagaccgtaaaatatctaac
agaagaatattccctgcaattgaccttacatcttctagtacccgtagagatgatctgtta
ctagatgacaacacaatacaacgtatgtggattttacgtaaatacttagccgatatgaac
cctgttgaagctatggagtttatagaacaacgtattaaacaaactaaaaataacgaagag
tttttattaacaatgaatcaataa
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