Actibacterium sp. EMB200-NS6: TQ29_02750
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Entry
TQ29_02750 CDS
T04096
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
con
Actibacterium sp. EMB200-NS6
Pathway
con03030
DNA replication
con03430
Mismatch repair
con03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
con00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TQ29_02750
03430 Mismatch repair
TQ29_02750
03440 Homologous recombination
TQ29_02750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
con03032
]
TQ29_02750
03400 DNA repair and recombination proteins [BR:
con03400
]
TQ29_02750
Enzymes [BR:
con01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TQ29_02750
DNA replication proteins [BR:
con03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TQ29_02750
DNA repair and recombination proteins [BR:
con03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TQ29_02750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Scaffold
DUF3443
Motif
Other DBs
NCBI-ProteinID:
ALG89289
LinkDB
All DBs
Position
549980..553456
Genome browser
AA seq
1158 aa
AA seq
DB search
MSSAPRFIHLRLHTEYSLLEGAVRVKKLPDMCKAAGMPAVAVTDTNNMFAALEFSVGASG
AGIQPIIGCQVDLAYDPPAPGEKPRAPAPLVLLAQNEAGYMNLMKLNSCLYLDAGGALPS
VSPEDLAHYAGGLICLTGGPEGPVGKLLQAGQRPKAEALMARLAALYPQRLYVELQRHPG
EGGKLTEAEQATERGHVEMAYAMDLPLVATNDVYFPKADMYEAHDALICIAEGAYVDQQQ
PRRRLTAQHYFKTPEEMAALFADLPEALANTVEIARRCAVKAERRDPILPKFADDEVEEL
RRQAKAGLKARLAVIPHAASVEEYEARLEFELGIIEGMGFPGYFLIVADFIKWAKDHDIP
VGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIQY
VQEKYGREKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKLIPVEGVKPVSIAQAL
VDEPRLREEARNEEVVERLLTYGQQVEGLLRNASTHAAGVVIGDRPLDELVPLYQDPRSD
MPATQFNMKWVEQAGLVKFDFLGLKTLTVIQGALDLLKQRGIEFDIGLIPLDDEPTYRLY
ASARTVAVFQVESSGMMDALRQMKPTCIEDIVALVALYRPGPMENIPTYCQVKNGQKDLE
SIHPLIDDILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKF
VEGAKKNGVDQKKATEVFDLLEKFANYGFNKSHAAAYAVVSYQTGYLKANYPVEFMAAVM
NCDIHLTDKLNTYAEEVRRGLEIEIIPPCVNRSGAVFGVKDGKLVYGLGALKNVGTDAMR
LIEEGRRADPANPASPDKPFATLYDFARRVDLKRIGKRPMEMLARAGAFDQLDPNRRRVF
DSLDALVNYSAAIHEQRSSNQVSLFGEAGDDLPEPRLSPIADWLPNERLAEEHKAIGFYL
SGHPLDDYMAPLKRKKVMTLAEVTQAARSGPVIAKIAGAVAGRQERKSAKGNRFAFAQLS
DPTGLYEVTLFSDVLEASRDNLETGSNVVLTVEATMESEQLKLLARAVQQIDSVVADAGS
MGLRIFVDEVSAVSAVAGLLDRAKGESGLRGRGPVQFCLMAPDLPGEVEIALPEDYPVNP
QIKGAIKSLPGVMQVEEV
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgcaccccgattcatccaccttcgtcttcacaccgaatattcgcttctcgag
ggggcggttcgggtgaagaaactgcccgatatgtgcaaggccgccgggatgccggcggtg
gcggtgaccgacaccaacaacatgttcgccgcgctggagttttccgtgggcgccagtggc
gcgggcattcagccgatcatcgggtgccaggtggatctggcctatgacccgcccgcccct
ggcgaaaagccgcgcgcgcccgcgccgctggttctgctggcgcagaacgaggcggggtac
atgaacctgatgaagctgaactcctgcctctatctcgatgcgggcggcgcgcttcccagt
gtgtcgcctgaggatctggcgcactatgcgggcggtctgatctgcctgaccggcggcccg
gaaggcccggtgggcaagctgttgcaggcagggcaacgcccgaaggccgaggcgctgatg
gcccggctggcggcgctctatccgcagcggctgtatgtggagttgcagcgccaccccggc
gagggcggcaagctgaccgaggccgaacaggcgaccgagcgcggccatgtggaaatggcc
tatgcgatggatttgccgctggtggccaccaatgacgtctattttcccaaggcggatatg
tacgaggcgcatgacgcgctgatctgcatcgccgagggcgcctatgtcgatcagcagcag
ccgcgccgccgcctgaccgcccagcattatttcaagacacccgaagagatggccgcgctg
ttcgccgacctgcccgaggcgctggccaataccgtggagattgcccggcgctgcgccgtg
aaggccgagcggcgcgatccgatcctgccgaaattcgccgatgacgaggtggaggagctg
cgccgccaggccaaggccgggctgaaggcgcggctggcggtgattccgcacgccgcctcg
gtcgaagagtacgaggcgcggctggaattcgagctgggcatcatcgagggcatgggcttt
cccggctatttcctgatcgtggccgatttcatcaaatgggccaaggatcacgatattccg
gtggggccggggcggggctcgggcgcgggctctctggtggcctatgcgctgacgatcacc
gatctggacccgctgcgctacagtctgctgttcgaacggttcctgaaccccgagcgggtt
tcgatgcccgacttcgatatcgacttctgcatggatcgccgcgaagaggtgatccagtat
gtgcaagagaaatacggccgtgaaaaggtgggccagatcatcaccttcggcgcgcttttg
tccaaggctgccgtgcgcgatgtgggccgggtgctgcagatgccctatggccaggtcgac
cggctgtcgaagctgatcccggtcgagggggtgaagcccgtttccatcgcccaggcgctg
gtcgacgagccgcgcctgcgcgaagaggcgcgcaacgaagaggtggtcgagcgcctgctg
acctacggccagcaggtcgaggggctgctccgcaacgcctcgacccacgccgccggcgtg
gtgatcggcgaccgcccgctggacgagctggtgccgctctatcaggatccacgctccgac
atgcccgcgacccagttcaacatgaaatgggtcgagcaggcgggccttgtgaaattcgac
tttctcgggctgaagaccctgacggtgatccagggcgcgctggatctgctgaagcagcgg
gggatcgagtttgacatcggcctgatcccgctcgacgacgagcccacctaccgcctctat
gccagcgccagaacggttgccgtgttccaggtggaaagctcgggcatgatggacgcgctg
cgccagatgaagccgacctgcatcgaggatatcgtggcgctcgtggcgctttaccgcccc
ggcccgatggaaaatatcccgacctattgccaggtgaagaacggccagaaggatctggaa
tcgatccaccccctgatcgacgatattctggaagagacgcagggcatcatcgtctatcag
gaacaggtgatgcagatcgcgcaggtcatggcgggctacagcctgggcggcgccgatctt
ctgcgccgcgccatgggcaagaagatcaaggaggcgatggatgccgagcgcccgaagttc
gtggaaggcgccaagaagaacggggtcgatcagaaaaaggcgacggaagtcttcgacctg
ctggagaaattcgccaactacggcttcaacaaatcccacgccgccgcctatgcggtggtc
agctatcagaccgggtatctgaaggcgaactatccggtcgagttcatggccgccgtcatg
aactgcgatatccacctgacggacaagctgaacacctatgccgaagaggtgcgccggggg
ctggagatcgagatcatcccgccctgcgtcaaccgctcgggcgcggtattcggggtgaag
gacggcaagctggtctatgggctgggcgcgctgaaaaacgtcggcaccgatgcgatgcgc
ctgatcgaagaggggcggcgtgccgaccccgccaatcccgcatcgcccgacaaacccttt
gcgacgttgtatgatttcgcccgccgggtcgatctcaagcgtatcggcaagcgcccgatg
gaaatgctggcccgcgccggcgccttcgatcagctcgaccccaaccgccgccgggtgttc
gacagcctggacgcgctggtgaactattccgccgccattcatgaacagcgttcatccaat
caggtgtcgctgttcggagaggcgggcgacgatctgcccgagccacgcctttcgccgata
gccgactggctgccgaacgaacggctggccgaagagcacaaggcgatcgggttttacctg
tcgggccatccgctggacgattacatggcgccgctgaagcgcaagaaggtgatgaccctg
gccgaggtgacacaggccgcccgttccggcccggtgatcgccaagatcgcgggcgccgtg
gccgggcggcaggaacgcaaatcggccaagggcaaccgctttgcctttgcgcagctttcc
gatcccaccgggctttacgaggtcacgctgttttccgacgtgctggaggcatcgcgcgac
aatctggaaaccggatcgaacgtagtgctgacggtcgaggcgacgatggaaagcgagcag
ctcaagctgctggcgcgggcggttcagcagatcgacagcgtggtggccgacgcggggtcg
atggggcttcggatcttcgtggatgaggtctcggccgtatccgccgttgccgggctgctc
gacagggcgaagggcgaaagcgggctgcgcgggcgcgggccggtacagttctgcctgatg
gcgccggatctgccgggcgaggtggaaatcgccctgcccgaggattatccggtgaaccct
cagatcaagggcgcgatcaagtcgctgccgggtgtgatgcaggtggaagaagtctga
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