Actibacterium sp. EMB200-NS6: TQ29_09915
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Entry
TQ29_09915 CDS
T04096
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
con
Actibacterium sp. EMB200-NS6
Pathway
con03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
con00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TQ29_09915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
con03400
]
TQ29_09915
DNA repair and recombination proteins [BR:
con03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TQ29_09915
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TQ29_09915
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
UB2H
DUF87
TrwB_AAD_bind
AAA
Kinesin
PT-TG
eIF3_p135
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
ALG90453
LinkDB
All DBs
Position
2036537..2038732
Genome browser
AA seq
731 aa
AA seq
DB search
MPYAHSDKSAPVLHAPAPDVKSRPKLEGGKRFVMKTDFTAAGDQPTAIAELSAGVNNGER
DQVLLGATGTGKTFTMAKVIEETQRPAIILAPNKTLAAQLYGEFKGFFPDNAVEYFVSYY
DYYQPEAYVARSDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVET
YGAMTQDLIVGQEYDQRKVMADLIAQAYRRNDAAFQRGSFRVRGDSLEIWPAHLEDRAWK
LSFFGEELEAITEFDPLTGSKTDTFDRIRIYANSHYVTPKPTMKQAIIGIRKELRTRLDQ
LVNEGKLLEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDHA
IVFADESHVSVPQIGGMYKGDFRRKMTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVS
ATPAKWEIEQTGGVFTEQVIRPTGLLDPQVEIRPVEMQVDDLLDEIRKVTADGFRTLVTT
LTKRMAEDLTEYLHEQGIKVRYMHSDIDTIERIEILRDLRLGAFDVLIGINLLREGLDIP
ECGLVAILDADKEGFLRSETSLIQTIGRAARNAEGRVILYADRITGSMERAISETDRRRE
KQMAYNLEHGITPATVKKNVEDILAGLYKGDVDMNRVTATVDKPLHGANLEAHLDGLRAA
MRKAAENLEFEEAARLRDEVKRLEAVDLAISDDPLARQSAVEAASDAAVNARGRSTAGRP
GQRGGVKRRGR
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgccctatgcccattccgacaaatccgccccggtgctgcacgcgcccgcgccggatgtg
aagtcccgccccaagctggaaggcggcaagcgctttgtgatgaagaccgatttcaccgcc
gccggtgatcagcccacggcgatcgccgagctttcggccggcgtgaacaatggcgagcgg
gatcaggtgctgctgggcgccaccggcaccggcaagaccttcaccatggccaaggtgatc
gaggaaacccagcgccccgccatcatcctggccccgaacaagacgctggcggcccagctc
tacggcgagttcaagggctttttccccgacaatgccgtggaatatttcgtcagctactat
gattattaccagcccgaggcctatgtcgcgcggtctgacacctatatcgagaaagaatcc
cagatcaacgagcagatcgaccggatgcgccattcggccacccgcgccctgctggagcgt
gatgacgtgatcatcgtggcgtctgtctcgtgtatctacggcatcgggtcggtcgagacc
tacggcgcgatgacgcaggatctgatcgtggggcaggaatatgaccagcgcaaggtgatg
gccgatctcatcgcccaggcctatcgccgcaacgacgcagcctttcagcgcggcagtttc
cgcgtgcgcggcgacagccttgaaatctggcccgcccaccttgaagaccgcgcctggaaa
ttgtcgttttttggcgaggaactggaggcgataacggagtttgacccgctgacaggttcg
aaaacggatacattcgaccgcatccgcatctatgcgaactcgcattacgtgaccccgaaa
ccgacgatgaaacaggcgatcatcggcatccggaaagaactgcgcacccggcttgaccag
ctcgtgaacgagggcaagctgctggaggcgcagcggctggaacagcgcaccaatttcgat
ctggagatgctcgaggcgaccggcgtgtgcaacgggatcgagaactattcgcgctatctg
accggccgcgccccgggcgagccgccccctacccttttcgaattcatccccgatcatgcc
attgtcttcgccgatgaatcccacgtctcggtgccgcagatcggcggcatgtacaagggc
gacttccgccgcaagatgacgctggccgaacacggcttccggctgcccagctgcatggat
aaccgccccctgaagttcgaggaatgggacgcgatgcgcccgcaatcggtgttcgtatcg
gcgacccccgccaagtgggaaatcgagcagaccggcggcgtcttcaccgaacaggtgatc
cgccccaccgggctgctggatccgcaggtcgagatccgccccgtcgagatgcaggtggac
gacctgctggacgagatccgcaaggtcaccgccgatggcttccgcacgctggtcaccacg
ctgaccaaacgcatggccgaagacctgaccgaatacctgcacgaacagggcatcaaggtc
cgctacatgcattccgacatcgacacgatcgaacggatcgagatcctgcgcgacctgcgg
ctgggcgccttcgacgtgctgatcggcatcaacctgctgcgcgaggggctggatatcccc
gaatgcggcctcgtcgccattctggacgccgacaaggagggcttcctgcgctcggaaacc
tcgctgatccagaccatagggcgcgcggcgcgtaacgccgaggggcgggtcatcctctat
gccgaccgcatcaccggctcgatggagcgcgccatcagcgaaaccgaccggcgccgcgaa
aagcagatggcctataacctggagcatggcatcacccccgcgaccgtcaagaagaacgtc
gaggatattctggccggcctctacaagggcgatgtggatatgaaccgcgtcaccgccacg
gtcgacaagcccctgcacggcgccaacctcgaggcgcatctggacgggcttcgggcggcg
atgcgcaaggccgccgagaacctggaattcgaagaggccgcaaggctccgcgacgaggtc
aaacggctggaggcggtggatctcgcgatctccgacgacccgctggcgcggcaatcggcg
gtggaggcggccagcgacgccgccgtaaatgcgcgcgggcggtcaacggcgggaaggccc
gggcagagaggcggcgtcaagcggcgggggcggtag
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