Coprococcus sp. ART55/1: CCU_08930
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Entry
CCU_08930 CDS
T02583
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
coo
Coprococcus sp. ART55/1
Pathway
coo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
coo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CCU_08930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coo03400
]
CCU_08930
Enzymes [BR:
coo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CCU_08930
DNA repair and recombination proteins [BR:
coo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CCU_08930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CBK82638
LinkDB
All DBs
Position
903288..906854
Genome browser
AA seq
1188 aa
AA seq
DB search
MIRVLGEPFEKLNIYTELKEWLASGDGFVNVTGTTGEGTDRVFMMQGFGDDASVRLILTY
NDRRAEELYSDMKFYGRDVYMYPAKDILFFSADVHGNAITRRRMEVLRRLATGEPCTIIA
TVDAMYDKIPALSYMKKYVINIHAAQSLDLDELKGKLVDLGYEKTDSVEEPGQFAIRGGI
VDIFPLTEECPYRIDMWDDEVDTIKTFDAESQRSIENVDELVIYPAGEMVLSKERIDRGI
HRLEAELKPYAKKLKDSFQTEAYARIKGEIATLKEQLTEFSAIYGVDSYVDYFYSDTVSL
VDCLPEDAYIFIDETKKVTEKADGSEKSFLSSLTHRLEGGYILPGQMKVLFTYDDVLEKC
RRYKVVGFDSFVGEDDRVKYAHRVEIESREVHSYRNNFDALVTDIKKWKKDKYSVLFVSP
SSVGAKRMVDNLMDNDVICHYLNDPDKALAAREMAVMPGRLRAGFMIPEMKLIVVSEGDV
FSSKTSHSQASRKKLPRAGEIVKSFSDVSVGDYVVHEKYGIGIYRGLEKIEVDGALKDYL
VIEYAEGGKLYVLASETDRIQKYRSKESRAPKINRLGGSEWQKVRNKVKGHVSEVAQHLV
KLYSERQAREGFAYSPDSEWQKEFEETFPYTETDDQLKAIEDVKADMESHKIMDRLVCGD
VGFGKTEVAIRAAFKAVGDSKQVAYLVPTTILAEQHYETFTERMKDYPVTVRLLCRFCTQ
KEIKSTLRELKEGKVDIVIGTHRLLSKDVEFKNLGLLIIDEEQRFGVNHKEKIKEMKTNV
DVLTLTATPIPRTLHMSLVGIRDMSLLEEPPVDRRPIQTYVMEYDRELAREAIARELARH
GQVYYVYNRVEGIERFADDVRSLVPYANVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTT
IIETGLDIPNANTIIIHDANLFGLAQLYQLRGRVGRSDRSAFAFMFYRRNKMISEVAEKR
LRAIKEYTDLGSGVKVSKADLNIRGAGSVLGESQSGNYEVVGYDLYCKMLNDAVRELRGE
KVFQEYETEIDLPVDSFIPETYVKNDFVKLELCKRISLIKNEDEYNDIVDELIDRFGDIP
DETMNLLDVALLRANANICFITRIWYKDGDLRFVMYNRADINVDGIDELVKSYSGRMKFV
MGAKPEFILKLGREEKNDLLRKAEFVVADMSQMLIMTHSEEDSVDNKA
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgatacgtgtacttggtgagccatttgaaaaactgaatatatatacagagttgaaggag
tggcttgcatccggagatggatttgtcaatgtgacaggtacgacgggcgagggcacggac
agagtattcatgatgcagggcttcggtgatgacgcatcggtgcgcctgatactgacatat
aacgacaggcgtgcggaggagctgtacagcgatatgaagttctacggaagggatgtatat
atgtatcctgcaaaggatattctgttcttcagtgcagatgtccacggcaatgccataacc
agacggcgcatggaggtccttcggcgtctggcaacgggagaaccatgtacgatcatagcc
acggtagatgcaatgtatgacaagatacctgcattgtcctatatgaaaaaatacgtgata
aatatccatgcggcacagtctcttgatctggatgagctcaagggcaagctggtggacctt
ggttatgaaaaaactgacagtgtggaggagccgggacaatttgccatacgaggcggtatc
gtggacatatttccgctgactgaggaatgtccatacagaatagacatgtgggacgatgaa
gtcgataccatcaagacatttgatgcggagagccagagatccatagagaatgtggatgaa
cttgtaatttatcccgcgggagagatggtgctttcaaaggagaggatcgacaggggtata
cacaggctggaggcagagctgaagccgtatgcgaagaagcttaaggattcatttcagacg
gaggcgtatgccaggataaagggcgagatagccacgctgaaggaacagctcacggagttc
agtgcgatatacggagtggatagctatgttgattatttttacagtgacacggtgtctctg
gtggactgcctgccggaggatgcgtacattttcatagatgagacgaagaaggtcacggag
aaggcggatggcagtgagaagagttttcttagcagcctgacgcacaggctggagggggga
tatatcctcccggggcagatgaaggttctgttcacttatgatgatgttctggaaaaatgc
agacgctacaaggttgtgggctttgactcatttgtgggtgaggatgaccgtgtaaagtat
gctcaccgcgtggagatcgagagcagggaggttcacagctacaggaacaattttgatgcg
ctggttactgatatcaagaaatggaagaaggacaaatacagcgtcctgttcgtatcgcca
tcatcggtcggtgcgaagagaatggtcgataacctcatggacaatgacgtcatatgtcat
tacctgaacgacccggacaaagctctggctgccagagagatggcggtcatgccgggaagg
ctcagagccggttttatgataccggagatgaagctcatcgtggtcagcgagggagatgtg
ttctccagcaagacatcacattcgcaggcttcgaggaagaagctgccgcgtgccggggag
atagtaaagtcattctcggatgtgagcgtgggcgattatgtggtccatgagaagtacgga
ataggtatctatcgtgggcttgagaagatagaggtcgacggcgccttgaaggactatctg
gtcatcgagtatgctgagggcggcaaattatatgtcctggcttccgagacggacaggata
cagaagtacaggagcaaggagagccgagccccgaagatcaacagactcggtggcagtgag
tggcagaaggtaagaaacaaggttaagggccatgtcagcgaggtggctcagcatcttgta
aagctgtactcagagagacaggcgagggaaggctttgcctattctcctgattccgagtgg
cagaaggagttcgaggagacatttccttatactgagactgacgatcagttaaaggccata
gaggatgtcaaggcggacatggagagccataagatcatggacagactggtgtgcggagac
gttggatttggtaagactgaggtggcgatccgtgctgcgttcaaggctgtcggtgacagc
aaacaggttgcgtatcttgtgccgaccacgatccttgccgagcagcattatgagacgttc
acagagcgaatgaaggattatccagtgacggtgagactgttgtgcagattctgtacccag
aaggagataaaatctacactcagagagctgaaagagggcaaggtggacatagtcatagga
acccacaggctgctctcaaaggatgtggagttcaagaatctgggacttctcataatagat
gaggaacagagattcggtgtaaatcacaaagagaagataaaagagatgaagaccaatgtg
gatgttctgacactgacggcgacgcctatcccgagaacactccatatgagtcttgttgga
atcagagacatgagcctgcttgaggagcctccggtggacaggagaccgatacagacctat
gtcatggaatatgacagggagcttgccagggaggcgattgccagagagcttgcaaggcat
ggtcaggtatactatgtgtacaacagggtcgaaggcatagagagatttgcggatgatgtg
agaagcctcgtgccatatgcaaatgtagagtttgcccatggacagatggatggccgcacg
ctggaggacatcatgtaccggttcaacaaaaaggagatagacgtgcttgtgtgcacgacc
atcatagagaccggacttgatataccgaatgcaaataccataatcatacacgacgctaac
ctgtttggtctggcacagctctaccagttacgcggaagagttggtcgctcggacagaagt
gcatttgcatttatgttctacaggcgcaacaagatgatatccgaggtcgctgagaagaga
cttagagcgataaaagaatatacggatctcggctcgggagtcaaggtgtccaaggcggat
ctcaacatcagaggtgcgggaagcgtcctgggcgagagtcagtcgggcaactatgaggtc
gtgggctatgacctttactgcaagatgcttaatgatgcggtcagggagctccgcggcgag
aaggttttccaggaatacgagacggagatagaccttccggtggattcgttcattcctgag
acgtacgtcaaaaacgactttgtcaagctggagctttgtaagagaatatccctcatcaag
aatgaggatgagtacaatgacatagtggatgagctcattgacagatttggcgacatccct
gacgagacaatgaatcttcttgatgtggcactgttaagggcaaatgcaaatatctgcttc
ataacccgtatatggtacaaggacggagacctgagatttgtcatgtacaacagggctgac
ataaatgtagatgggatagatgagctcgttaagagttattcaggcaggatgaaatttgtc
atgggggcaaagcctgagtttatattgaagcttggacgggaggagaaaaatgatcttctc
agaaaggcggaatttgtcgtggcggatatgtcccagatgttgataatgacccacagtgaa
gaagacagtgtggataacaaagcatag
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