Coprococcus sp. ART55/1: CCU_11960
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Entry
CCU_11960 CDS
T02583
Name
(GenBank) Rad3-related DNA helicases
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
coo
Coprococcus sp. ART55/1
Pathway
coo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
coo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CCU_11960
09124 Replication and repair
03420 Nucleotide excision repair
CCU_11960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coo03021
]
CCU_11960
03400 DNA repair and recombination proteins [BR:
coo03400
]
CCU_11960
Enzymes [BR:
coo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
CCU_11960
Transcription machinery [BR:
coo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CCU_11960
DNA repair and recombination proteins [BR:
coo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CCU_11960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
PhoH
IstB_IS21
Rad4
Motif
Other DBs
NCBI-ProteinID:
CBK82862
LinkDB
All DBs
Position
complement(1199500..1201968)
Genome browser
AA seq
822 aa
AA seq
DB search
MNIKISVRSLVEFIFRSGDISDSSSGTLSREAMNAGSRIHRKLQKRAGSHYNSEVPLRYT
EELGGHLITVEGRADGIIDRCGGEQEESGDIDDGFDMAEGYAVDFHDSDVLIDEIKGIYR
NLDDMESPQRVHVAQAMCYAYIYSKENNYSWIDVRISYVNLDSEKEKFFRRRYSFGYLEK
WFSSMMAELCKWIDLVEKHQLMRNQSISDMEFPFEYRKGQKEMALYVYRAIEQEKHLYVQ
APTGIGKTMAAVYPSIKSMVQGHVSKIFYLTAKTIAHTVSRNAVELLEDRGLRLKTVILT
AKEKICCQEQVDCNPAVCPYAEGHFDRVNDALYDVVLHETVVDRDVVIRYAQAHRVCPFE
LSLDVSLFADMVICDYNYVFDPRASLKRFFAAEGGKPGDYVFLVDEAHNLVDRASSMYSA
EIVKEDFLELKKLTAQYGGRMARHIGSCNRELLTMKKEVPEEGYRVLSSIAPLHLKLLSL
HEAIQLFLEEHRQIPERKEVLNFYFNLTSFLNIAEMMDENYVVYDEIRDDGRFVVRLYCV
KPAVNIRNCLDKGLATVFFSATILPVRYYMEMLSDCPEDRAIYIPSPFSAENRKIMIAND
VTTRYTNRNEAMYRNIYSYIERVISARPGNYMVFFPSYAMLEKVHVLTEELPESLGVEVI
AQEQYMTESDRESFLRAFEEKDNVLALCIMGGIFSEGIDLTGDRLIGAIIVGPGLPQVCT
ERKLMMDYFDSRTAADEKEAASDRNGFRYAYQYPGINKVFQAAGRVIRTETDQGIILLID
ERFATRRYTELFPVEWNDSVICNMQNVDGILEQFWDYKSKEI
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgaatataaaaatatcagttaggagcctggtggaattcatcttccgcagtggcgatata
agtgatagcagtagtgggactctgtccagagaagcgatgaatgcgggtagcaggattcac
aggaagcttcagaaaagggcagggtctcattataattcagaggtgccgctccggtataca
gaggagcttggcggacatctgataactgtggagggccgggctgatggaatcatagacaga
tgcggtggcgaacaggaagagtccggggatattgacgacggctttgacatggcagagggg
tatgctgtggacttccatgacagcgatgtgcttatagatgagataaagggcatatacagg
aacctcgatgacatggagagcccgcagcgcgtccacgtggcccaggcgatgtgctatgcg
tatatatattcaaaagagaataattatagctggatagatgtgaggataagttatgtaaac
cttgacagcgagaaggagaagttcttcaggcggagatattcatttggctatctggagaaa
tggttcagctcaatgatggcggagctttgcaaatggattgatctggtggaaaagcatcag
ctcatgaggaatcagtccatctcggacatggagttcccatttgagtacaggaagggccag
aaggagatggctctgtatgtgtacagggctattgagcaggaaaaacatctgtatgtccag
gcaccaactggaatcggaaagaccatggcggcggtgtacccgtccataaaatccatggtt
cagggacatgtgtcgaaaatattctatctgacagccaagaccatagcccacactgtgtcg
agaaatgcggtggagctgctggaggacagaggtctcaggcttaagactgtaatactcacg
gcaaaagagaagatatgctgtcaggaacaggtggattgcaatcctgcggtatgtccgtat
gccgaggggcattttgacagggtaaatgatgcgctgtacgacgtggtattacatgagacg
gtggttgacagagatgtggtaatacggtacgcacaggctcacagggtgtgtccgtttgag
ttgagccttgatgtgagtctgtttgctgacatggtgatatgtgactataactatgtcttt
gatccgagggcgagcctcaagaggttctttgcggcagagggcggtaagccgggagattat
gtattccttgtggatgaggcgcacaaccttgtggacagggcttcgtccatgtacagtgcg
gagattgtgaaggaggactttctggagctcaagaagctcacagcccagtatggcggccgt
atggcaagacatataggaagctgcaacagagagctgcttacgatgaagaaggaggttcct
gaggagggatacagggtgctctcgagcatagcacctcttcacctgaaattgctcagcctc
catgaagcaatacagctctttctggaggagcacaggcagatcccggagagaaaggaagtc
ctgaacttttattttaatctcacttcatttctgaacattgcggagatgatggatgagaat
tatgtcgtgtatgacgagataagggatgacggaagatttgtggtgagactgtactgcgtc
aagcctgcagttaacataagaaactgcttggacaaagggcttgccacggtgtttttctcg
gctacgatacttcctgtcagatattatatggagatgctgtcggactgcccggaggacagg
gcaatatacatcccgtctccattttctgcggagaacaggaagataatgatagcaaatgat
gtcacgaccagatacacgaaccgtaatgaggcgatgtacaggaacatttacagctatata
gagcgcgtgataagtgcgagaccgggcaactatatggtgttctttccatcgtatgccatg
ctggagaaggtgcatgtgctcactgaagagcttccagagtctcttggggtggaagttata
gcccaggaacaatacatgacggagagcgacagagagagctttctgagggcatttgaggag
aaggacaatgtgctggcactgtgtatcatgggcggaatattctccgagggaatcgatctg
actggtgacaggctgataggagcgataatagtcggacccggtcttccccaggtgtgcacg
gagagaaagctgatgatggattacttcgacagcagaaccgcggcggacgaaaaagaggct
gcatccgacaggaatggattcagatatgcgtaccagtacccgggaataaacaaggtattt
caggctgccggaagagtcataaggacggagacggatcaggggataatacttctgatagac
gagagatttgccaccaggcgttacacggagctgtttcctgtggaatggaatgacagcgtg
atatgcaacatgcaaaatgtggacgggatccttgaacagttctgggattataaaagtaaa
gagatttaa
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