Coprococcus sp. ART55/1: CCU_16390
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Entry
CCU_16390 CDS
T02583
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
coo
Coprococcus sp. ART55/1
Pathway
coo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
coo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CCU_16390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coo03021
]
CCU_16390
03400 DNA repair and recombination proteins [BR:
coo03400
]
CCU_16390
Enzymes [BR:
coo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CCU_16390
Transcription machinery [BR:
coo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CCU_16390
DNA repair and recombination proteins [BR:
coo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CCU_16390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Tudor_krimper_1st
Motif
Other DBs
NCBI-ProteinID:
CBK83172
LinkDB
All DBs
Position
complement(1690587..1694309)
Genome browser
AA seq
1240 aa
AA seq
DB search
MPEYNVDNAEQEKSLNFDAIKIGLASPEKIREWSHGEVKRPETINYRTLKPEKDGLFCER
IFGPQKDWECNCGKYKKIRFKGIVCDKCGVEVTKSNVRRERMGHIELAAPVSHIWYFKGI
PSRMGLILDISPRVLEKVLYFSSYIVTDPKDTPLAYKQILNEQEFREAEKEYGYGSFVAE
MGAEAIQKLLKAIDLDAESAELKKELETCSGQKRTRIIKRLEVMEAFRTSENRPEWMIMN
VIPVIPPDIRPMVQLEGGRFATSDLNDLYRRIINRNNRLRRLLDLGAPEIIVRNEKRMLQ
EAVDALIDNGRRGRAVTGPGNRALKSLSEMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKIYQCGLPKEMAIELFKPFVMKELTATGKANNIKQAKKMVEKLEPQVWDILEDVIKEHP
VMLNRAPTLHRLGIQAFEPVLVGGKAIKLHPLVCTAFNADFDGDQMAVHLPLTVEAQAEC
RFLLLSPNNLLKPSDGAPVAVPSQDMVLGIYYLTMEKEGEIGEGRYFKSKNEAILAYENG
GITLHTKIHVRRTGEFEGEEVTGVIDTTLGKLLFNEIIPQDLGYVDRTVRENALKLEIDF
HVGKKQLKPILDKCINTHGATKTAEVLDDVKAIGYKYSTRSAISVSISDMKVPDEKKDIL
EDAQKLVDQITKKFRRGLVSDEERYQAVVKIWEKADKHLQDLLFAGLDKYNNIFMMADSG
ARGSNQQIKQLAGMRGLMADTTGKTIELPIKSNFREGLDVLEYFISAHGARKGLSDTALR
TADSGYLTRRLVDVSQDLIIREPDCSIGRDSIPGMVIEAFREGKEMIEEFQERITGRYLA
ESVYDAEGNMLVKINHMVTPKRAELIVKKGVDANGVPFTVKDDDGNEVVRSDAKLKIRTV
LTCKSHLGVCAKCYGANMATGMPVQVGESVGIIAAQSIGEPGTQLTMRTFHTGGVAGGDI
TQGLPRVEELFEARKPKGLAIIAEFGGKVQLRDNKKKREVVITNDETGESKAYLIPYGSR
IRVLDDQVLEAGDELTEGSVNPHDILKIKGVRAVQDYMLREVQKVYRLQGVDINDKHIEI
IVRQMLKKIIIDEPGDSDYLPGTQADLLEFEDTNEKLIAEGKEPATGTQIMLGITKASLA
TDSFMSAASFQETTKVLTDAAIKSKVDPLIGLKENVIIGKLIPAGTGMKRYRSVKLDTDM
EELNFFDEDEDTDDYEELENVNSEEIVFETLDTAGDADEE
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgccagaatacaatgtagacaatgcagaacaggaaaagtcattgaactttgacgcaata
aaaatcggacttgcatctcctgaaaagataagagaatggtcacatggtgaggtaaagcgc
cctgagactatcaactatagaacacttaagcctgagaaggacggtctgttctgtgagaga
atatttggaccacagaaggactgggagtgtaattgtggtaagtacaagaagatcagattc
aagggaatcgtgtgtgataagtgtggagttgaggtaacaaagtccaacgttcgtagagag
cgtatgggacatattgagctcgctgctcctgtatcacatatatggtacttcaagggaatc
cctagccgtatgggactgatccttgatatatcaccaagagtgcttgagaaggtactgtac
ttctcatcatatatagtaacagatccaaaggatactccgcttgcttacaagcagatcctc
aacgagcaggagttcagagaggcagagaaggagtatggttacggttcattcgttgcagag
atgggcgcagaggctatacagaagcttctcaaggcaatagaccttgatgccgagagcgca
gagcttaagaaagagcttgagacatgcagcggccagaagcgtacaaggatcatcaagaga
cttgaggtaatggaggcattcagaacatcagagaacagacctgagtggatgatcatgaat
gtaatacctgttatcccaccagatatcagacctatggtacagcttgaaggtggaagattt
gcaacatcagacctcaacgatctgtacagaagaattatcaacagaaataatcgtctccgc
agactccttgatctcggtgctcctgagatcatcgtgagaaatgagaagagaatgcttcag
gaggcagttgatgcacttatagataacggtagacgtggacgtgcggtaacaggccctggt
aacagagcactgaagtcactttcagagatgctgaaaggtaagcagggacgtttccgtcag
aaccttcttggtaagcgagttgactactcaggacgttcagttatcgtagttggaccagag
cttaagatttaccagtgcggtctccctaaggagatggctatcgagctgttcaagccattt
gttatgaaggagcttacagctacaggtaaggcaaacaatatcaagcaggcaaagaagatg
gtagagaagcttgagccacaggtttgggacattcttgaggatgtcatcaaggagcatccg
gttatgcttaaccgtgcccctacacttcacagacttggaatccaggcatttgagccagtg
cttgtaggcggtaaggctataaagcttcacccactcgtatgtacagccttcaatgccgat
ttcgatggagaccagatggctgtccatcttccacttacagtagaggcacaggctgagtgt
agattccttctgctttcacctaacaacctgctgaagccatcagatggtgcgcctgttgcc
gttccttcacaggatatggtacttggtatctactatctgacaatggaaaaggaaggcgag
atcggagagggaagatattttaagtccaagaatgaggcaatacttgcatatgagaatggt
ggaattacacttcacaccaagatccatgtaagaagaaccggtgagttcgagggcgaggaa
gttacaggtgttatcgatacaacacttggaaagcttctcttcaatgagatcattccacag
gatctcggatatgtagacagaactgttcgtgagaacgctctgaagcttgagatagatttc
catgtaggaaagaagcagctcaagccaatccttgacaagtgtatcaatacacacggtgca
acaaagactgcagaggttcttgatgatgtcaaggcaataggatataagtattcaacaaga
agtgctatatcagtatctatttcagatatgaaggtgcctgatgagaagaaggatatcctt
gaggatgcacagaagctcgttgaccaaatcaccaagaagttcagacgtggtcttgtatca
gacgaggagagatatcaggcagtagttaagatctgggagaaggcagataagcatctgcag
gatctcctgttcgcaggtcttgataaatataacaatatattcatgatggctgattctgga
gcccgtggttctaatcagcagatcaagcagcttgcaggtatgcgaggactgatggcagat
acaacaggtaagaccattgagctcccaatcaagtctaacttccgagagggacttgacgtt
ctggagtatttcatttcagcgcatggtgctcgtaagggtctgtcagatacagctcttcgt
acagccgattcaggatacctgacaagacgacttgtagatgtatcacaggatcttataatc
agagagcctgattgtagtataggaagagattcaattccgggtatggtcattgaggccttc
agagagggcaaggaaatgatcgaggagtttcaggagagaatcacaggacgttaccttgca
gagtctgtatatgatgcagagggcaacatgcttgtcaagataaatcatatggtaactcct
aagagagctgagctcattgttaagaagggtgtcgatgccaacggcgttccattcaccgtt
aaggatgacgatggaaacgaagttgtaagatcagatgcaaagcttaagatcagaacagtc
ctcacatgtaagtcacacctcggtgtgtgtgcaaagtgctacggtgcgaacatggcaaca
ggaatgcctgtacaggttggtgagtcagttggaattatcgctgcacagtcaatcggtgag
cctggtacacagcttacaatgagaacattccatacaggtggtgttgccggtggcgatatc
acacagggtcttccaagagttgaggagcttttcgaggccagaaagccaaagggacttgcg
atcattgcagagtttggcggaaaggtacagctccgtgacaacaagaagaagagagaggtt
gtcataacaaacgatgagacaggtgagtcaaaggcatatcttattccttatggttcacgt
atcagagttcttgatgaccaggtacttgaggctggtgatgagcttacagagggatcagtt
aatccacatgatatccttaagataaagggtgttcgtgcagttcaggattacatgctccgt
gaggttcagaaggtttacagacttcagggtgttgatatcaatgataagcacattgagatc
atcgtaagacagatgcttaagaagatcataattgatgagccgggagattcagattatctt
ccaggaacacaggcagatctgcttgagtttgaagatacaaatgagaagcttatcgcagag
ggcaaggagcctgcaactggaacacagataatgcttggtataacaaaggcatcacttgca
actgattcatttatgtcggctgcatcattccaggagacaacaaaggttcttacagatgct
gcgatcaagagtaaggttgatccacttatcggacttaaggaaaacgttatcatcggaaag
cttatacctgctggtacaggaatgaagagatatcgttcagtaaagcttgacactgatatg
gaagagcttaacttctttgatgaagatgaggatacagatgattacgaagagttagagaat
gtaaattcagaggagatcgtatttgagaccctcgatacagccggagatgctgacgaagag
taa
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