Corynebacterium pseudotuberculosis 31: CP31_08310
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Entry
CP31_08310 CDS
T02029
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cop
Corynebacterium pseudotuberculosis 31
Pathway
cop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP31_08310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cop03019
]
CP31_08310
03009 Ribosome biogenesis [BR:
cop03009
]
CP31_08310
Enzymes [BR:
cop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CP31_08310
Messenger RNA biogenesis [BR:
cop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP31_08310
Ribosome biogenesis [BR:
cop03009
]
Prokaryotic type
rRNA processing factors
CP31_08310
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AFH91388
LinkDB
All DBs
Position
complement(1781197..1784601)
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AA seq
1134 aa
AA seq
DB search
MAEETTKKVPARRATRKAATRKAADDTATQDTVVPVDRDAIGDRIRVHALAKLASVSSRE
LIATLATLGLTKVAQSTLTREEALKLLDAHHIDSYSAEEKLRHRVEKNVENEIHQIEEKV
ERELNPDAEAAKLDDPEESEKLRRRIEKNVENEIHQIEEKVERELQDREVVREEDHQDSS
ENAVAEDTTVVITEDEAAELLSDIEPEITPAPGLSAPAFPTPLFIAPTPAEELESNVDDS
VEDDEESAQSRRRRRGRRGTGRGKRTDSEDSFSEDLEESPDSEDAGEEKTEELITEPVGI
KGSTRLEAQRRRRAEMREESRNKRHIVSEAEFLARRESVKRTMIVRERERSDHPGVVTQV
GVLEDDLLVEHFVTSDTQSSMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWR
AAGLGGRGRRIEQALKSGDQVLVQVSKDPAGHKGARLTTQISFAGRYLVYVPNGRTAGIS
RKLPAPERKRLKNILKEVVPKDGGAIIRTAAENVSAEAIAADVNRLHKLWNQIQELTEKE
KNSKGAKPVTMYEEPNMLVKVVRDLFNEDFSELIVDGDRAWNTVHAYIQSVAPELQDRLI
KFDREAHEDRDAFEVHRVDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSG
GNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLSENQDLVLRRLTEALGRDRT
RHQISEVTSLGLVQMTRKRLGTGLLETFATECEHCEGRGVIIHDDPVEQSVSDAAIEKSS
RARSGKAKAARKHGVAHQDPAQHPAAIAMQHHEEAGSAAGSNTSDASTADTSPVADTRTS
IDDLAAAVVIDDVELEKVVDSVASDVAEPGLLEPSKEKKGRRRRRGLRNSKRKDRGAADD
VMDIVDAALDRAFTEDPDEPSGADHLPLSGNKLSRSTTSVTYEEALAAFENSPRRKRAVR
GNSVSDHAPKPEDFKRIDVTEGAEEDTFASEASEETYSGSRRSRRVARKQGETRKAVENP
TQSEAADDTESTGNVKIDSLRGRRRRAVRRRFQETNLAPLVVETAEEESTAKGRRRRRAV
RKTVVKAPRKAVIGEESSGVYVKDETVPETREASSAGRGRRRVARRVRTATKRN
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaagagaccacaaaaaaggtgcctgcgcgtcgggcgacacgaaaggctgcaact
cgaaaggctgctgacgatactgctacgcaggatacggtggtacctgttgatcgtgatgcg
atcggcgaccggattagggtgcatgcgctggctaaattagcgtcggtaagttcacgtgaa
ctcatcgctactcttgccacactagggcttactaaggttgcgcagtcgacgctgacccgc
gaagaagccctgaagctactcgacgcccaccacatcgacagctactcagccgaagaaaag
ctgcgccaccgggtggaaaagaatgtggaaaatgagatccaccagatcgaagaaaaagta
gagcgtgagcttaaccctgatgctgaggccgccaagctcgatgatccggaggaatccgag
aagctgcgccgacgaatagaaaagaatgtggaaaatgagatccaccagatcgaagaaaaa
gtagagcgtgaactgcaagaccgagaggtagtgcgcgaggaagaccaccaggattcttct
gaaaacgcagtagcggaagatacgaccgtagtgatcaccgaggacgaggcagcggagctt
ctttcagatatcgagccagagatcacgcccgctccgggactgtctgccccggctttcccc
acgccactgttcattgcgccgacgccagcggaagaactggaaagcaacgtcgatgactct
gttgaggatgatgaggagtcggcgcagtctcgtcgtcgccgtcgcggtcgccgaggcaca
gggagaggaaagcgaactgattctgaggattccttctctgaggatctcgaggaatccccg
gacagtgaagacgctggtgaggaaaagaccgaggaactgatcaccgaaccggtcgggatc
aaagggtctacgcgcctggaagcgcagcgtcgtcgtcgtgcggagatgcgagaagaatcg
cggaataaacggcatatcgtttcagaagcagaattcttggcgcgccgggaatctgtaaag
cgcaccatgattgtgcgggaacgcgagcggagtgatcatcctggagtagtgacccaggtg
ggcgttttagaagacgatctactagttgagcactttgttaccagcgatacgcagtcctca
atgatcggaaacatatatttgggacgcgtccaaaatgtgttgccgagcatggaggccgca
tttatcgatattggaaaaggccgcaatggcgttctctatgcgggcgaagtggactggcgt
gccgcaggcttaggaggccgggggcggcgtattgagcaagccctcaagtctggcgatcag
gtgcttgttcaggtatccaaagatcccgcaggccacaagggtgcgcggttgaccacccag
atttctttcgcagggcgttacctggtgtacgtgcccaacgggcgcaccgcgggtatttct
cgcaagcttcctgctccagagcggaagcgcttgaagaatatcctcaaagaggttgtgcct
aaagacggcggagctatcatccgtaccgctgcggaaaatgtctctgcggaggctatcgct
gcggacgtgaatcggttgcacaagctgtggaatcagattcaagagctcacggagaaggag
aaaaactccaagggtgctaagcctgtcaccatgtatgaagagcccaacatgttggtgaag
gtggtgcgtgatcttttcaacgaggacttctcggagctgattgtcgacggcgaccgtgct
tggaataccgttcacgcctatatccagtcagtagctcctgagctacaggatcgtctgatt
aagtttgatcgggaagcacacgaggatcgcgatgcgtttgaagtgcaccgcgtagatgaa
cagctgcacaaggccttgtcgcggaaagtgtggcttccctctggcggaaccttagtgatc
gaccgtacagaagctatgacagtcattgacgtgaacaccgggaagttcacgggttctggc
ggcaatcttgaagaaacggtaactcgtaataaccttgaggctgcagaagaaatcgttaga
cagatgcggttgcgcgatcttggcggcatgatcgttgtggacttcattgacatggtcctt
tcagaaaaccaggatctagtgttgcgtcgactcaccgaggcactaggccgtgaccggacg
cgtcaccagatttctgaggtgacgtcgttaggcctggtgcaaatgactcgaaagcgtctt
ggcacgggcttgctagagacttttgccaccgaatgcgagcattgcgagggccgtggagtc
atcattcacgatgaccccgtggaacaaagcgtttcggatgccgctattgagaagtcctcg
cgcgcacgttccggaaaggctaaggcagctcgaaaacatggggttgctcatcaagatccg
gcgcagcatcctgctgctatagcaatgcagcatcatgaggaggctggctctgccgccggt
tccaatacctctgacgccagcactgctgacaccagccctgttgctgatactcgaaccagc
attgatgatcttgccgcagctgtggtgatcgatgacgtagagcttgagaaggtcgtggac
tccgtggcgagtgacgttgcggaacctggtttgctggagccatccaaagagaagaagggg
cgcagaaggcgtcgcggcttgcgcaattccaagcgaaaggacaggggagcagcggacgat
gttatggacatcgtcgacgcggctttggaccgagcttttacagaagatccagacgagccc
tcaggtgccgatcatctgccgctatcgggtaataagctcagccgcagcactacttctgtg
acctacgaggaagcgctggcagcgtttgagaattctccgcgtagaaaacgtgcggtgcgt
ggaaactccgtatcggatcatgcgccaaaaccggaggattttaagcgtatcgacgtcacc
gagggagccgaagaagacacgtttgcaagcgaagcttctgaggagacctattcaggtagc
cgccgctcacgccgcgtggccaggaaacagggagaaacgcggaaggccgtggagaaccca
acgcaatcagaggctgcggacgataccgagtcgacgggtaacgtgaagatagattctcta
cgcgggaggcgccggcgtgccgtgcgcaggaggttccaagaaacaaatcttgctccatta
gtcgttgagactgcggaagaagaatcgacggcgaagggtcgacgccgtcggcgtgccgtg
cgtaaaacggtggtgaaagcgccccgtaaggctgttatcggtgaggaatcttccggtgtg
tacgtgaaagatgagacggtgccggaaacgcgcgaggcatcatctgcgggccgagggcgg
cgacgcgtggcgcgtcgggtgcgcacggcgacaaagagaaactaa
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