Coprobacter secundus subsp. similis: Cop2CBH44_10930
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Entry
Cop2CBH44_10930 CDS
T06867
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
copr
Coprobacter secundus subsp. similis
Brite
KEGG Orthology (KO) [BR:
copr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
copr03016
]
Cop2CBH44_10930
Enzymes [BR:
copr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cop2CBH44_10930
Transfer RNA biogenesis [BR:
copr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cop2CBH44_10930
Prokaryotic type
tRNA splicing ligases
Cop2CBH44_10930
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GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BCI62740
UniProt:
A0A7G1HT97
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Position
1396491..1397660
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AA seq
389 aa
AA seq
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MVQKVVMGTRLPAKLWLDDVEDSCMAQIISLASLPFAFKHIAIMPDAHTGKGMPIGGVLA
TIGVVIPNAVGVDIGCGMCAVKTNLKASELSVNQIKAIMKHIRKTIPLGFDHQKNAMDKS
LLPDLDLDACPFLRNKTVAMLKEIGTLGGGNHFIEIQKDTKKDDVWIMIHSGSRHVGLTV
ANYYNKQAEILCERWYADTLPGLAFLPIEEQVGKDYMHEMEYCKHLAFANRKVMMEQVQQ
GFMDNCTNVNFEPIINIAHNYAAWENHFGKNVIVHRKGATRAFKGEIGIIPGSMGTKSYI
VEGLGNPESFMSCSHGAGRKMSRSVAFKTLDLSEECRRMDEQGIIHGMRKSGLDEAPSAY
KDIEAVIAFENDLIKPIIELAPLAVVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggtacaaaaagtagttatgggtaccagattacccgcaaaattatggcttgacgatgtg
gaggattcatgtatggcacagattatcagtctggcatcactcccattcgctttcaaacac
atagccatcatgcctgatgcacacacaggcaaaggcatgcctatcggtggtgtacttgca
actataggtgtagttatccctaacgcagtaggcgtggatattggctgtggaatgtgtgct
gtgaaaaccaatcttaaggcttcagaactttctgtcaatcaaatcaaagccatcatgaag
catatccgtaaaacaatccctcttggcttcgaccaccaaaagaatgccatggataaaagt
cttcttcctgacctcgatctcgatgcatgccctttcttaaggaataagacagttgctatg
ctcaaggagattggcactttgggaggcgggaatcatttcattgaaattcagaaagataca
aagaaagatgatgtatggattatgatacactctggtagccgacatgtcggtctcacagta
gccaactattacaataagcaggcagagatactctgcgaacgttggtatgcagatacacta
cccggacttgcattcttgcccatagaagagcaagtgggtaaagactatatgcatgaaatg
gagtattgtaaacatctagcttttgccaatcgtaaggttatgatggaacaagttcagcaa
ggttttatggataattgcacaaatgtaaactttgaaccaataataaacatcgctcacaac
tatgccgcttgggagaatcactttggtaagaatgtaattgttcatcgaaagggtgctaca
cgagcatttaagggtgagattggtattattcctggttcgatgggtacaaagtcttacatc
gtagaaggtcttggtaatccagaatcattcatgagttgctcacatggtgctggaagaaag
atgagtcgttcagttgctttcaagactctcgacctctcagaagagtgccgtcgtatggat
gagcaaggtataatccatggtatgcgtaagagtggacttgatgaagccccaagtgcttac
aaagatattgaggctgtaattgcatttgaaaatgatttgataaaacctattatagaactt
gctcctcttgcggtggtaaaaggagactaa
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