Coprobacter secundus subsp. similis: Cop2CBH44_25930
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Entry
Cop2CBH44_25930 CDS
T06867
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
copr
Coprobacter secundus subsp. similis
Pathway
copr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
copr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cop2CBH44_25930 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
copr03021
]
Cop2CBH44_25930 (rpoB)
03400 DNA repair and recombination proteins [BR:
copr03400
]
Cop2CBH44_25930 (rpoB)
Enzymes [BR:
copr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cop2CBH44_25930 (rpoB)
Transcription machinery [BR:
copr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cop2CBH44_25930 (rpoB)
DNA repair and recombination proteins [BR:
copr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cop2CBH44_25930 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Glyco_hydro_80
CCDC168_N
T3SS_needle_reg
Motif
Other DBs
NCBI-ProteinID:
BCI64240
UniProt:
A0A7G1HXA3
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All DBs
Position
3247265..3251077
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AA seq
1270 aa
AA seq
DB search
MSSNIGKPRVNFASIKNPLQYPDFLEVQLKSFRDFLQLDTPPEKRKNEGLYKVFAENFPI
ADTRNNFVLEFLDYYIDPPRYTIDECIERGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDV
YLGPIPYMTEKGTFVINGAERVVVSQLHRSPGVFFGQSTHANGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGFESDKDILEIFGLAEEVKVNKTNLKKAVGRR
LAARVLKTWVEDFVDEDTGEVVSIERNEVIIDRETVLEEEHIEEILESGVSNILLHKEER
NLSDYSIIYNTLQKDSSNSEKEAVLYIYRQLRNAEPADDASAREVITNLFFSEKRYDLGE
VGRYRINKKLNLSTPADIKVLTKEDIIEIIKYLIELINSKTDVDDIDHLSNRRVRTVGEQ
LYNQFGVGLARMSRTIRERMNVRDNEVFTPIDLINAKTISSVINTFFGTNALSQFMDQTN
PLAEMTHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYA
KINDLGFIETPYRKVENGKVDLSENGIVYLTAEVEEGKVIAQGNAPLNDDGTFIRTRVKS
RLDADFPIVAPEEVNLMDVSPTQIASIAASLIPFLEHDDANRALMGSNMMRQAVPLLRTE
APVVGTGLEGQLIRDSRTQITAEGAGVVEFVDATTIRIRYDRTEEEEFVSFEDSVKEYTI
PKFRKTNQSTTVDLRPICHKGDRVAAGQILTEGYSTENGELALGKNLKVAFMPWKGYNYE
DAIVLNERVVREDILTSVHVDEYSLEVRETKRGMEELTSDIPNVSEEATKDLDERGIIRV
GAHVNPGDIMIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKATPSLKGVVIGTNL
FSRAIKKKKSKLSDKAILPKLDEEYEEKEAKLKDLLIEKLMILTNGKTSQGVKDYLGAEI
IAKGAKFTQKALSEIDYTSIQVSKWTTDTAKNELIRATIMNYLKKYKEIDAELRRKKFDI
SIGDELPSGIVQMAKVYIAKKRKISVGDKMAGRHGNKGIVSRVVRQEDMPFLEDGTPVDI
VLNPLGVPSRMNLGQIFETVLGWAGVKLGEKFATPIFDGASLDDLNEWTDKAGLPRYGKS
YLYDGHTGERFDQPATVGVIYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAFGASHVLQEILTIKSDDVVGRSKAYEAIVKGEPMPTPGIPESLNVLLHEL
RGLGLSINLE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaatataggtaaaccacgggtaaattttgcttcaatcaagaatccgcttcaa
tatccggactttcttgaagtgcagttgaagtctttccgagacttcttacaactggatacg
cccccggaaaaaagaaaaaatgagggcttgtataaggtgtttgcagaaaattttccgatt
gcagatacccggaataattttgtcctcgaatttttggattattacattgatccgcccaga
tatactatcgatgaatgtatcgagagagggttgacttacagtgtgcccttgaaggctaaa
ctgaagttgtattgtacagatcccgatcacgaagattttgataccgtgatacaggatgtg
tatcttggcccgattccttacatgaccgagaagggtacattcgttataaatggtgctgaa
cgtgtcgtagtatcgcagcttcaccgttctccgggtgttttcttcggacaaagtacgcat
gcaaatggtacgaaactctattctgctcgtattattccttttaaaggttcttggattgag
tttgctaccgacattaataatgtcatgtatgcctatattgacagaaagaaaaaattgccg
gttacaactttgttgagagctatcggtttcgagagtgataaagatatcctcgaaattttc
ggacttgccgaggaggtaaaagtaaacaagacgaatcttaagaaagctgttggtcggcgc
ttggctgcccgtgtgttgaagacctgggtagaagactttgtggacgaagatactggagaa
gttgtttctatcgaacgtaatgaggttatcatcgatcgagaaacagttctggaagaagag
catattgaagaaattcttgaatccggagtatccaatatcttattgcataaggaagaaaga
aatctttctgattattcgattatttacaatacgttgcagaaagactccagtaactcggag
aaagaagcagtgttatacatatatcgccaacttcgtaatgctgaaccggctgatgatgcc
agtgctcgcgaagtaattacaaatttattcttctctgaaaagagatatgacttgggtgag
gtaggacgttatagaatcaataaaaaattgaatctgtccactccggccgatataaaggtc
ttgacgaaagaggatattatcgagattatcaaatatcttattgagttgattaattcgaag
accgatgttgatgatatcgaccacttgagtaaccgtcgtgtaagaactgtaggtgaacaa
ttgtataaccagtttggtgtcggactggctcgtatgtcacgtacaatacgtgaacgtatg
aacgttagggacaatgaggtatttacaccgatcgatttgattaatgccaagactatttct
tcggtaatcaatacattcttcgggacgaatgctctgtctcagtttatggaccagacgaat
cctttggccgaaatgacacataaacgtcgtatgtcggctttgggacctggaggtttgtcg
agagagcgtgccggatttgaggttcgtgacgtacattacacacattacggtcgtttgtgt
cctattgaaactcctgagggaccgaacatcggtcttatatcttcactttgtgtatatgca
aaaatcaatgaccttggatttatcgaaactccatatcgtaaagtcgaaaatggaaaagtt
gatttgtccgaaaatggtattgtgtatttgacggctgaagtagaggaaggtaaggttatt
gctcagggtaatgctccgctaaatgatgatggtacatttattcgtacgagagtaaaatca
cgtttggatgcggatttccctattgtagctcctgaggaagtaaacttaatggatgtttct
cctacgcagattgcatctattgcagcttcgttgattcctttccttgaacatgatgatgca
aaccgtgcattgatgggttcgaacatgatgcgccaggccgtaccgttgcttcgtaccgaa
gctccggttgtaggtaccggtttggaaggtcagttgattcgggattctcgtacgcagatt
actgccgaaggtgcaggagttgtggaatttgtcgatgcaacgacaatacgtattcgttat
gatcgtaccgaagaagaagagtttgtaagttttgaagattcggttaaagagtatactatt
cccaagttccgcaagaccaaccaaagtactactgtggatttgaggcctatttgccataag
ggagaccgggtagctgccggacagattttgacggaaggttattctaccgaaaacggagaa
ttagcattaggtaaaaacctgaaagtagcatttatgccgtggaagggttataactatgaa
gatgctattgtacttaacgaacgtgtagttcgtgaagatatattgacttcggtacacgta
gatgaatattctttggaagtacgtgaaacgaagagaggtatggaagagttgacttctgat
atacctaatgtgagtgaagaagcaacgaaagaccttgacgaacgtggtatcatccgtgtg
ggggctcacgtaaatccgggtgatataatgattggtaagattacgcctaagggagagtct
gacccgtcaccggaagaaaaattgttacgtgcaatctttggtgataaagcaggtgatgtg
aaagatgcatcgttgaaagctactccttcattaaagggtgtggttatcggtaccaatctg
ttctcaagagctattaagaaaaagaaatctaagctaagtgataaagctattcttcctaaa
ttggatgaagagtacgaagaaaaagaagccaagctcaaagacttgttgattgaaaaattg
atgatattgactaacggcaagacgtctcagggagtaaaagattatctgggagcggaaata
attgccaaaggagctaaatttactcaaaaggctttgagcgagatagattatacctctatt
caagtaagtaagtggactaccgatacggctaagaacgaattgatacgggctactattatg
aattacttgaaaaagtataaggaaatcgatgcagaacttcgtcgtaagaaattcgatatt
tcgattggagatgaattgccttcaggaattgtacagatggccaaggtgtatatcgccaag
aaacgtaagattagtgtaggtgataagatggccggtcgtcatggtaacaaaggtatcgtg
tcgcgagtcgttcgtcaagaagatatgccgttcttggaagatggaactccggttgatatc
gttttgaatcctctgggtgtgccgtctcgtatgaacttaggacagatttttgaaaccgtt
ttgggatgggccggtgtaaaattaggcgaaaaatttgcaacgcctatttttgacggagca
agccttgatgatttgaatgagtggactgacaaagcaggcctgcctcgttatggtaaatca
tatttgtatgatggacataccggagaacgttttgaccagccagcaacggtaggggttatc
tatatgttgaaactgggtcatatggttgaagacaagatgcatgctcgttcgataggtcct
tattctttgattacgcaacagccgttaggtggtaaagctcagtttggaggtcagcgtttt
ggagaaatggaggtttgggctcttgaggcattcggtgcttctcacgttttacaggagatt
ttgacaattaagtcggatgatgttgtcggacgttctaaagcatatgaagccattgtaaaa
ggtgagcctatgcctacacctggtattcctgagtctcttaatgtgcttttgcatgagttg
agaggtcttggtcttagcatcaatttagaataa
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integrated database retrieval system
