Commensalibacter melissae AMU001: D9V35_05325
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Entry
D9V35_05325 CDS
T05684
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
coq
Commensalibacter melissae AMU001
Pathway
coq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D9V35_05325 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coq03019
]
D9V35_05325 (recQ)
03400 DNA repair and recombination proteins [BR:
coq03400
]
D9V35_05325 (recQ)
Enzymes [BR:
coq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D9V35_05325 (recQ)
Messenger RNA biogenesis [BR:
coq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D9V35_05325 (recQ)
DNA repair and recombination proteins [BR:
coq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D9V35_05325 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
AYN86955
LinkDB
All DBs
Position
complement(1172377..1174209)
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AA seq
610 aa
AA seq
DB search
MFDKVRLHDERDPQKILETVFGYQCFRGLQKQAIDLVMQNQDVLLLMPTGGGKSICYQIP
ALCRSGMGLVISPLIALMDDQVAALRQLGISAGALHSELENEEAYNIRHDIASKKLKLLY
VSPERLLHNDTLKFLEKIQISMIAIDEAHCISVWGHDFRPEYRLLCDLPRIFPSVPRIAL
TATADPVTQKDIIQALDMPEAKILRSSFHRSNLFIRVIQKNTESKQLRELLKKYRDAACI
VYCGSRNKSERIAHNLVRYGFTALAYHAGLSALEKRGILLRFRSGEPLIIVATVAFGMGI
DRPDVRLVVHLDMPRGPEDYYQQIGRAGRDGDLAETVLFYNGADVAKARYFLEHSTITDE
QKKIACSRLDMMVALSETAECRTKLLLHCFGENQDKSCNHCDNCKNPVRLLNGTIAAQKV
ISAVYRTGQRFGAMHIINVLRGKYNIQVKNFQHDRLSLFGIGKDKSHNFWRSVIHQLMAR
DVLRQGEEFSNLFLNQEKARPLLRGKKSLFLREDIEKSEIYKCQNTDDTLLITQNRHKLF
DELKKWRSDEARKQQVPPYIIFHDSVLREVALCNPQTLKDFKDIKGVGNMKLEHYGLKLL
EIIKEFQNNR
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgataaagttagattacatgatgagagagacccccaaaaaatactagaaacagtt
tttgggtatcagtgttttcgtggtttgcaaaaacaggcgattgatcttgtaatgcaaaat
caggatgttttgttattgatgcccaccgggggaggtaaaagtatttgttatcaaatcccg
gctttgtgtcgttctggaatgggcttggttatttcaccattaattgcattgatggatgat
caggtagcagctttaaggcaattaggtataagtgcaggtgcattacactcagaattggaa
aatgaggaagcatacaatatccgtcatgatattgcttcaaaaaaactcaagctcttatat
gtttccccagaacgcttgctccataacgatacattgaaatttttggaaaaaattcaaatt
tccatgattgcaattgatgaagcccattgtatatccgtatggggacatgattttcgtccg
gaatatcgccttttatgtgatttacctcggatatttccctctgttccaagaattgccctt
acagcaacagctgatccagtcacgcaaaaggatatcattcaggctttggatatgcctgaa
gccaaaattctgcgatccagttttcatcggtctaatttatttatacgtgtaatacaaaaa
aataccgaatccaaacagctaagggaattattaaaaaaatatcgggatgcggcttgtatc
gtgtattgtggaagtcgtaataaatctgaacggatagctcataatcttgttcgttatggt
tttaccgctttagcttatcatgccggtttatccgcacttgaaaaaagaggtatcctatta
aggtttcgatcaggagagcctttaattatcgttgcgacggttgcttttggaatgggaatc
gatcgtccggatgtcagattggttgtgcatttggatatgcccaggggaccagaagattat
tatcaacaaataggtcgggctggacgggatggtgaccttgccgaaaccgttttattctat
aatggtgctgatgttgctaaggcgcgatattttcttgaacattctacgattacagatgaa
cagaagaaaatcgcgtgttcaagacttgatatgatggtggcattatctgaaacggctgaa
tgccgaacaaaacttttgttgcattgttttggagaaaaccaggataagtcttgtaatcac
tgtgataattgtaaaaatcctgtaagactgttaaatggaactatagcggctcagaaagtg
atttctgcagtataccgcaccggacaacgttttggagcaatgcatattattaatgtattg
cgaggcaaatataatattcaagttaaaaattttcagcatgatagactttctttatttggt
attgggaaagataagtcacacaatttttggcgttctgttattcaccaattgatggcccga
gatgttttgcgtcagggagaggaattttcaaatttgtttctaaaccaagaaaaagcccgt
ccgttgttaagggggaaaaagagtttatttctgcgtgaagatattgaaaaatctgaaata
tataaatgtcaaaatacagacgatacattgctaataacacaaaaccggcataaattattt
gatgaattaaaaaaatggcgatcagatgaggcgcgtaaacaacaggttcctccatatatc
atttttcatgattcggtgttaagggaagtagctctttgtaatccccaaaccttgaaagat
tttaaggatataaaaggtgtagggaatatgaaattggaacattatggattgaaattatta
gaaataatcaaggagtttcaaaataatagataa
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