Commensalibacter melissae AMU001: D9V35_06050
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Entry
D9V35_06050 CDS
T05684
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
coq
Commensalibacter melissae AMU001
Pathway
coq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
coq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D9V35_06050 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coq03400
]
D9V35_06050 (mfd)
Enzymes [BR:
coq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D9V35_06050 (mfd)
DNA repair and recombination proteins [BR:
coq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D9V35_06050 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
AAA_16
Cation_ATPase_N
Motif
Other DBs
NCBI-ProteinID:
AYN87088
LinkDB
All DBs
Position
complement(1329057..1332527)
Genome browser
AA seq
1156 aa
AA seq
DB search
MGGASKKQFKNFLPIWGAPEGYDAFLLSKIAQECYQKDNHVLVHVARNDIDMNRLADLLY
YIAPQLNVLNFPAWDCLPYDRVSPNKAITSEQVATLTQLLEPLTGPRIILTTIPALLQKI
APRSVFAGRALTLKQGESLDQEFLVELLVAQGYNRTDTVMEPGEFALRGSLFDIFLAGEE
EPVRLDLFGDEIDSIRCFDPITQRSTRKVTELVLRPTAAYSLDEESISRFRTKWRELFGQ
GSMSDPIYEAVSEGRMVQGLEHWLPLFHDKMETFFDYVSDVKLSFSYQAEEALQPRLEMI
ADHYEARKQPVRNGEVVYRPLPPDLLYLTQSEWNHIVTRYKGVYFYPFAMPDGSSGMDAG
GRPGIVFAKSNLTVEADNVFDMFKSRFREWYSSGRKTLVAGWTNGSRERIATLLKEHKIA
VQKLEGWQEVKNFREASVGLLTFGLDRGFVADDFILVSEADLLGERISRPHRKRKKAEQF
ISEASEISEGDLIVHQEYGIGRYQGLVNLEIGAAPHDCLALVYHGDEKLFLPIENIELLS
RYGSDQTGVALDKLGSPAWQKRKATMKARIRDMAGELLKTAAARLMQEATIETPPEGLWE
EFCARFPFIETDDQARAVADIIQDLASGRPMDRLICGDVGFGKTEVALRATFIVAMNGGQ
VAVVVPTTLLARQHYQTFVKRFEGFPVKIAQLSRMVTSKNAAQIKKELADGNVNIVIGTH
ALLAKTIKFANLGMLIIDEEQHFGVAHKEKLKTLREDIHVLTLSATPLPRTLQLSLTGMR
EISLIATPPIDRLAVRTFIMPFDRIVIREAIQRERFRGGQIFCVAPRVQDLQNLQDQLLD
IVPDLRLVQAHGRLSPTELERVMTEFNEGKYDVLLSTNIVESGLDMPTVNTLIIYKADHF
GLGQLYQLRGRVGRGKQRGYAYLTWPQHHFLSKNSEKRLEIMQSLDNLGAGFTLASHDLD
LRGAGNLLGEEQSGHIREVGVELYQKMLEETVASLRAEKNNQLLENQDWTPNITLGLPVL
IPETYVTDLSVRLGLYRRIGNLENHDDIEAMQVELIDRFGTLPEEVSNLLHVMKLKKLCK
KVGVNRIEAGPKGVVVQFFNNQFKNPEGLVQWIAGIKDQSVRLRPDGKLIYLRETPFAKR
IQRCQFLLSKLVEIYR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggggggagcctcaaaaaagcaatttaaaaattttttgccgatatggggagctcccgag
ggatatgatgcctttttattaagtaaaattgctcaggaatgttatcaaaaagataaccat
gttctggttcatgtcgcacggaatgatatagatatgaaccggttggctgatttactctat
tatatcgcacctcaattaaatgttttgaattttcctgcctgggattgtttgccttatgac
cgtgtatccccgaacaaggcgataacctcggaacaggtagcaacattgacgcaattactt
gaacccttgaccgggccaaggatcatattgacgacaatacccgcactgttacaaaaaata
gcacccagatcagtctttgcgggacgtgctctgacccttaaacagggtgaaagtctggat
caggaatttttagtcgaacttcttgttgcgcagggatacaatcgtacggatacagttatg
gaaccgggtgaatttgccttgaggggtagtttatttgatattttcctggctggggaagaa
gagcctgtccgcttggatttattcggagatgagatagattcaattcgctgttttgatccg
attacgcaacgttcaactcggaaagttacggaacttgttttaagacctaccgcagcttat
tctctggatgaggaaagcatatcaaggtttcgtacgaaatggcgagaactgtttggtcag
ggatcaatgagtgatccaatttatgaagccgtttcggaaggccgaatggttcaaggactt
gaacattggttacctctttttcatgataagatggaaacgttttttgattatgtttctgat
gttaaactgtctttttcatatcaggccgaggaggcattgcaaccaagactggaaatgatt
gctgatcattatgaagcccgcaaacagccagtaagaaatggcgaagttgtatatcgtccc
ttaccacctgatttgctatatcttactcaatctgagtggaatcatatagtcacgcgatat
aaaggggtgtatttttatccttttgcaatgcctgacggatccagtggaatggatgcagga
ggaaggccaggtatagtttttgctaaaagtaatctgacagttgaagccgataatgttttt
gatatgttcaagtcaagattcagggaatggtattcatctggacggaaaacattggttgcc
ggctggacaaacggatcaagagagcgcatcgctacattattgaaagaacacaaaatcgcc
gttcagaaactggaagggtggcaagaagttaaaaatttcagggaagcttctgttggatta
ttgacttttggtttggatcgcggatttgttgccgatgatttcattcttgtttctgaagcc
gacttgttaggggaaagaatttcacgtccacatagaaaacggaaaaaagccgagcagttc
atttcagaagcttctgaaattagcgagggagatcttattgtacatcaggaatatgggatt
ggtcgttatcaaggactggttaatctggaaataggtgctgcgccacacgattgtctggca
cttgtttatcatggtgatgaaaaattattcttacctatcgaaaatattgagttattgagc
cgttatggatctgatcaaacgggtgttgctctggataaactgggaagtcctgcatggcaa
aaacgtaaagccacaatgaaggctcgtattcgggacatggctggtgagttattgaaaaca
gccgcggcccgcttgatgcaggaagcgacgatcgagacccctcctgaaggattgtgggag
gagttctgtgcacggtttccctttattgaaacggatgatcaggcaagggctgttgctgat
attattcaggatcttgcttccggacgtcccatggatcgtttgatttgtggtgatgttggt
tttggtaagacagaagtggcattacgtgccacttttattgtggccatgaatggaggccag
gtggcggttgtggtgccgacaaccctattggcacgtcaacattatcaaacctttgtgaaa
cgttttgagggatttccggtaaaaattgcccaactttccagaatggtgacatcaaaaaat
gcggcacagatcaaaaaggaattggcagatggcaatgtcaatatagtgattggtacacat
gctttactagccaagacgatcaagtttgcaaatttgggtatgcttattatagatgaagaa
cagcattttggtgttgcgcacaaagagaaattgaaaaccttgcgtgaagatattcatgta
ttgacattatctgccaccccattaccaaggacgttgcaattatcattgactggaatgcga
gagataagtctaatcgcaacgcctccaattgatcgtttggctgttagaacttttatcatg
ccctttgatcgtatcgttattcgagaggctattcaaagggagcgattcagaggggggcaa
atattctgtgttgcaccacgtgttcaggatttgcaaaacctgcaagatcaacttttggat
atagttccagatttacggttggtacaagctcatgggcggttatcccctacagaacttgaa
cgggtgatgactgaattcaatgaaggtaaatatgatgtattgctttcgactaatattgtt
gaaagtggactggacatgccaactgtcaatacactgataatctataaggctgatcatttt
ggattaggtcagttatatcaattgagaggtcgtgtgggacggggaaaacagcgtggatat
gcgtatttgacatggccacagcatcattttctttccaagaattctgaaaagcgactggaa
ataatgcagtcactggataatcttggggcaggattcactttggcatctcacgatctggat
ttgagaggggcgggtaatctgctgggagaagaacagtctggtcatattcgggaagttggc
gttgagctataccagaagatgcttgaagaaacagtggcaagcctccgtgcagaaaaaaat
aatcagttattggaaaatcaggattggacacccaatatcactttgggattacctgttctg
atcccggaaacctatgtgacggatctatcagtaagattgggtttatatcgacgaataggc
aatctggaaaatcatgatgatattgaagccatgcaagtggaattgatagatcgttttggg
accttgcctgaagaagtaagcaatctgcttcatgtaatgaaactgaaaaaactttgtaaa
aaagttggtgttaatcgcattgaggctggaccgaaaggggttgttgttcagttttttaac
aatcaattcaaaaatcctgaaggattagtacaatggatagccggtattaaagatcagtct
gtgagattgcgtcctgatggtaaattgatatatttgcgagaaaccccgtttgcaaaacgg
attcagcgttgtcaattcttattaagcaagcttgttgaaatttaccgataa
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