Commensalibacter melissae AMU001: D9V35_06410
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Entry
D9V35_06410 CDS
T05684
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
coq
Commensalibacter melissae AMU001
Pathway
coq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D9V35_06410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coq03019
]
D9V35_06410
03009 Ribosome biogenesis [BR:
coq03009
]
D9V35_06410
Enzymes [BR:
coq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D9V35_06410
Messenger RNA biogenesis [BR:
coq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D9V35_06410
Ribosome biogenesis [BR:
coq03009
]
Prokaryotic type
rRNA processing factors
D9V35_06410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AYN87147
LinkDB
All DBs
Position
1415143..1417653
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AA seq
836 aa
AA seq
DB search
MNKKMLIDASYKEETRVVILDGNYIEGYDIENSAKKQIKGNIYLAKVIRIEPSLQAAFVD
YGGNRHGFLAFNEIHPDYYQIPVADRKKLLEIQELNKMEEEPNPDQELDPDQPSYYEDMV
HSHNSIIKNYKIQEVIHKRQIILVQVVKEERGNKGAALTTYLSLAGRYCVLMPNSLRNGG
ISRKITSPSERKRLKDIITELNIPSHMGMIIRTAGAQCPKADTLKDGEYLLHLWDEIRNL
TMKSIAPALIYEDSNLLKLTLRDNYTQDINEILIDGEDAWSQARDYMRALMPQNVHKLHL
WRDQKQSLFSYYKVENLIDQMLSPIVQLKSGGYLVINQTEALVAIDVNSGRSIKEKDLEE
TALRTNQEAANEIARQLRLRDLAGLIVIDFIDMENKKHNYIVERRLKSLLHKDRARIQIG
SISSFGLLEMTRQRLRPSIAEFAFTPCSACNGTGIIRSDANISLQIIRQIDEEARKIKPG
ILTVSISSGEIALNILNQKRRWLADIEKKYKIKIEFTIDSTLSSHNVRFSSKTDSSLDME
PDDEILQSTPNVIQENLFVREIPIQSYLEYQTNSKTDYRQDEIEDKVIDLKPESKALRQN
SVSIEHKQDDTILDSYPEQYKENKKTYSNSKDKRQSHHSRRNRYKKGQGKAQKNNDFTPI
LEAEPIPEAVINEKPEEITVTPTFVSIEIDADKSQIHREETETLINQVIDNSDAVNKEDE
NSDNLEIKEEKPAPKRRRATKTTKSTGTTKTTRKRASSKKESKENETEEKSDNKEEKETK
IKKTTRARKTTTAKKTTLRKPKKTKEADENNEQPLIQPIVIDDTPTKTPRSGWWKR
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaaaaatgctgattgatgccagctataaagaagaaacacgcgtcgtgatcctt
gatggcaattacatcgagggatatgatattgaaaattccgcaaagaaacaaataaaaggt
aatatctacctagccaaagtaatcagaattgaacccagtctacaggctgcttttgttgat
tatggtggaaatcgccatggttttttagcttttaatgaaattcaccctgattattatcaa
attcccgttgcagaccgaaaaaaactgctggaaatccaagaattaaataaaatggaggaa
gaaccaaatccggatcaagaattggatccagatcagccttcctattatgaagacatggtt
cattcccataatagcataatcaagaactataaaattcaggaagttattcataaaagacaa
attatcctcgttcaagtggtaaaagaagaacgtggaaataaaggcgcggcattaacaacc
tatctatctttggcaggacgctattgtgttttaatgccaaattccttacggaatggcgga
atttctagaaaaatcacttcaccatctgaaagaaaacgattgaaggatattatcactgaa
ctgaatatcccatcacatatgggaatgattatccgtactgcaggagcccaatgcccaaaa
gcagataccctaaaagatggggaatatctgcttcacttatgggatgaaatacgcaatcta
accatgaagtcgattgcgccagctcttatttatgaagattccaacttattgaaattgaca
ttacgtgataattatacacaagatattaatgagattttgatagatggcgaggatgcttgg
tctcaagcgagagattatatgcgtgcattgatgccgcaaaatgtacataagcttcatctg
tggagagatcaaaaacaatctcttttttcttattacaaggttgaaaatttgattgatcaa
atgctttccccgattgtccaactaaaatcagggggatatttagtcattaatcaaacagag
gctttggttgctattgatgtaaattcaggccgttcaatcaaggaaaaagatcttgaagaa
actgcattgagaaccaatcaggaagccgccaatgaaattgcacgccagttaaggttgaga
gatctggctggattaatcgttatcgatttcattgatatggaaaacaagaagcataattat
attgttgaacgtcgtttgaaatctctacttcacaaagaccgtgcacgaattcagatcggt
tccatctcctcctttggcttactggaaatgacccgtcaaagattacgtccctctattgct
gaatttgccttcactccatgttccgcttgtaatggaacaggtattattcgaagtgacgcc
aatatttctttacaaatcatcagacagattgatgaagaagctcgtaaaatcaaaccagga
attttaaccgtttccatttcatccggtgaaattgccttgaatattctcaaccaaaaacgc
agatggctggcggatattgaaaagaaatataaaatcaagattgaatttacaattgattca
accctgtcctctcataatgtccgtttttcaagcaaaactgattcctcacttgatatggaa
cctgatgatgaaatacttcaatctacaccaaatgtaattcaggagaatctttttgtcagg
gaaataccaatccaatcctatcttgaatatcagacaaattcaaaaacagattatagacaa
gatgagatagaggataaagttattgatctaaagcctgaatcaaaagcattacgtcaaaat
tctgtttccatagagcataaacaagacgatacaattctcgattcttatccggaacaatat
aaagaaaacaaaaaaacatatagtaactccaaggataaaagacaatcccatcattcccgt
cgtaaccgttataaaaaaggacaaggtaaggctcaaaaaaataatgactttactcccatt
cttgaggctgaacctataccagaagctgtcatcaatgaaaaacctgaagaaataactgtg
actccaacctttgtttcaattgaaattgatgccgacaaaagccagattcatcgtgaagaa
actgaaactttgataaatcaagttattgataattctgacgctgtaaataaagaggatgaa
aattcagataatctggaaataaaagaggaaaaacctgctccaaaacgtcgacgggccact
aaaaccaccaaatccacaggcaccaccaaaacgacacgtaaaagagcatcaagcaaaaaa
gagtctaaagaaaacgaaaccgaggaaaaatcggataataaagaggaaaaggaaacgaag
atcaaaaaaactaccagagcacgtaaaacaactacagccaaaaaaacaacgcttcgaaaa
cccaaaaaaaccaaagaagctgatgaaaataacgaacaacccttaatacagcccattgtc
atagatgacacaccgaccaaaacgccacgttccggctggtggaaacggtaa
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