Commensalibacter melissae AMU001: D9V35_06755
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Entry
D9V35_06755 CDS
T05684
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
coq
Commensalibacter melissae AMU001
Brite
KEGG Orthology (KO) [BR:
coq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
D9V35_06755 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coq03021
]
D9V35_06755 (rpoD)
Transcription machinery [BR:
coq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D9V35_06755 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AYN87207
LinkDB
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Position
complement(1489391..1491346)
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AA seq
651 aa
AA seq
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MAVTTPSKIEENSSDNDTNVLDTQSAVVKRLISKGKERGYVTLDELNAILPQDKMSSEQI
EDVMAIFSEMNIQIIENEEEDADGEESENESDKDDSEETVATETNTGRTDDPVRMYLREM
GAVELLSREGEIAIAKRIEAGRNQMIGGLCESPLTFRAIIGWYEQLKTEEMLLRDIVDLE
ATENEYDQVELSNMDGSLSASLDHDTSDDSEEENEDGEETESGADEENNLSLAALEEKHK
DEILKHFNEIEKNYPKLYELQAQRLETIQAGEKLTSKFETKYEALRDKLIEEVQQIHLQS
NKIEFLVEQLKTVSKKLASLEGSMLRAAEKCKISRDDFLSKYHGHELNPDWLEAVGNLPS
KYWKLYIEKYGKEIGQYRDQIAELSQKVGLPVTEFRRVFSTVSYGERDASRAKKEMIEAN
LRLVISIAKKYTNCGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI
ADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPMPEELAEKLGMPLEKVRKVLKIAKE
PISLEIPVGDEEDSHLGDFIEDKSAVIPLDAAIQTNLREATTRVLASLTPREERVLRMRF
GIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLDDN
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcacaacaccatctaaaattgaagaaaattcaagtgataacgatacaaatgtt
ttggatacacaatccgctgttgtaaaacgtttgataagtaaagggaaagagcgcggttac
gtaactttagatgaattgaatgctatcttgccccaagataaaatgtcttctgaacagatt
gaagatgttatggctattttttcagaaatgaacatccagattatagagaatgaagaagag
gatgcggatggtgaagaatccgaaaatgagtcagataaagatgattcggaagaaacagtt
gcaactgaaacgaatacaggtcgaaccgatgatcccgttaggatgtatttgcgtgaaatg
ggggcggtagagcttctttcgcgtgagggggaaattgccattgccaagcggattgaggct
ggacggaaccagatgattgggggcttatgtgaaagccccctgacttttagggcaatcatt
gggtggtatgaacagttaaaaaccgaagagatgctgttaagggatattgttgatctggag
gcaactgagaatgaatatgaccaggttgagttgtcaaatatggatggttctttgtccgct
tcgcttgatcacgatacttctgacgacagtgaggaggaaaatgaggatggtgaggaaacg
gagagtggcgcggatgaagaaaataatctttctcttgctgctctagaggaaaagcacaag
gacgagatcctcaaacatttcaatgaaattgaaaagaactatcccaagttatatgagtta
caggctcagcgcttggaaacgattcaggccggtgaaaaacttaccagtaaatttgagaca
aaatatgaggctttaagggataagcttattgaagaggttcagcaaattcatttgcaaagt
aataaaatcgaatttcttgtggaacagttgaaaacggtttccaaaaagcttgccagtcta
gagggaagtatgttgcgtgcagctgaaaaatgcaaaatttcccgtgatgactttttatca
aaatatcatggtcatgaattgaatcctgactggcttgaagcggttggaaatttacctagc
aaatactggaaactttacattgaaaaatacggtaaagaaattggtcaatatcgtgatcaa
attgccgagctttctcaaaaggtgggattgccggtaacagaatttagacgggttttttct
actgtttcgtatggtgagcgcgatgcgtctcgtgccaagaaagaaatgatcgaagcgaat
ttgcggttggtcatttcaattgcaaagaaatatacgaattgtggattgcaatttttggat
ttgattcaagaaggcaatattggtttaatgaaagcggttgataaatttgaatatcgtcgg
ggatataaattttcaacctatgcaacttggtggattcgtcaggcaattacccgttcaatt
gccgatcaggctcgaacaatccgtattcctgttcatatgattgaaacaataaataaatta
gtacggacttcacgacagatgctgcatgaaattggcagggaaccaatgccggaagagttg
gcggaaaaactcgggatgcccttggaaaaggtaagaaaagtattaaaaattgctaaggaa
cctatttcactggaaattccagtgggtgatgaagaggatagccatttaggggacttcatt
gaggataaaagtgctgttattccattggatgcggcaatccagacaaatttgcgagaagca
acgacacgtgttctggcttccttgaccccaagggaagaacgcgttttgagaatgcgtttt
ggtattgggatgaatacagatcatacgctggaggaggttggacagcagtttaatgtcaca
cgtgaacgtattcgccagattgaggcaaaagccttgcgtaaattaaaacatccaagtcgt
agtcgcaaattacggtcatttttggatgacaactaa
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