Commensalibacter melissae AMU001: D9V35_07040
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Entry
D9V35_07040 CDS
T05684
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
coq
Commensalibacter melissae AMU001
Pathway
coq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
coq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D9V35_07040 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coq03021
]
D9V35_07040 (rpoC)
03400 DNA repair and recombination proteins [BR:
coq03400
]
D9V35_07040 (rpoC)
Enzymes [BR:
coq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D9V35_07040 (rpoC)
Transcription machinery [BR:
coq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D9V35_07040 (rpoC)
DNA repair and recombination proteins [BR:
coq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D9V35_07040 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AYN87261
LinkDB
All DBs
Position
complement(1544812..1549062)
Genome browser
AA seq
1416 aa
AA seq
DB search
MNELMKILGQTGQAMTFDQIKIQLASSEQIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIVCEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMIDMTLKDLERVLYFENYVVLEPGTSPLKQYSLLTEDQYLDAMEEYGHEGIEIG
IGAEAIKKILVNIDCDVEKVELRAELKETTSEVKRKKLVKRLKLVEAFAESGCRPEWMIM
SVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDIIEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPASGKPIIVPSQDIVLGLYYLSLEIPEFKLTPDQSEYDSEGHLIKKG
APLFANIGEIEHALSSRILKLHDKIRCRFQTKNADGELVYQKVVTTAGRMLISQILPKHP
AINFSLINQQLTKKTISDIIDIVYRHCGQKECVIFADRMMGLGFSYAAKAGISFGKDDMI
IPDAKKELVAKTTEEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMMKKISHVE
PGQPINSVWMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLDYFT
STHGARKGLADTALKTANSGYLTRRLVDVAQDCIIIEPDCGTERGLVVRAVMDGGEVISS
LAERILGRTLAADVTDPATGKILYPRNTLLEEAEVEAIEKANVESVMIRSVLTCDSQVGV
CAHCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQKGAEQSMVESSR
DGKIKIVNLNVVQNSQGFDIVMSRNCEIILLDDNGIERAHYRIPYGARLLAKNGSNVKRH
QKMAEWDPYTLPIITEKSGTIEYQDLIEGITLVERMDEVTGLSSKVVVDYKQTSKSRDLR
PRLQLKDSNGEVMKLGNGNDARYFLSPDSLLSVENGAQVNAGDVLARIPREGSKTRDITG
GLPRVAELFEARRPKDHAIIAENDGVVEFGKDYKAKRRIVVRNEDAGEETEYLIPKGKHI
SVQEGDFVRKGDPLVDGPRVPHDILKVLGIEALSDYLIDEIQSVYRLQGVKINDKHIEVI
VRQMLQKIEVTDPGDTTYLIGETVDRLEFEQENIKRMNANERPATGSPVLQGITKAALQT
KSFISAASFQETTRVLTEAASAGKVDTLMGLKENVIVGRLVPAGTGSVMNRFRAMAYSRD
RQRILDANKMNDEAEIELSSVTSENNEIKDVTQVTE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaacttatgaaaattcttggtcagactggccaagcaatgacgtttgatcagatt
aaaattcaattggcctcgtctgaacagatacggtcttggtcttatggtgaagtgaaaaag
ccagagacaatcaattatcgtacttttaaaccagaacgggatggattgttttgtgcgcgc
attttcggtccgatcaaagattatgaatgtctttgtggtaaatataaacggatgaaattc
cgtggcatagtatgtgaaaaatgcggtgttgaagttacgcttgccaaagtgcgtcgtgaa
cgtatggggcatattgagcttgcaagcccggttgcacatatttggtttttgaaatctctt
ccaagtcgtatcggattaatgattgatatgactttgaaagatctcgagagggttttgtat
tttgaaaattatgttgttttagaacccgggacatcgccattaaaacaatatagcctgctg
actgaggatcaatatcttgatgctatggaagaatatgggcatgaaggtattgaaataggg
attggtgcggaagcgattaagaaaattctggtcaatatcgattgtgatgttgaaaaggta
gaattacgtgccgaattaaaagaaacgacctctgaagtcaaacgtaagaagcttgtaaaa
cgtttaaaactggtggaagcttttgcagaaagtggttgtcgtcctgaatggatgatcatg
agtgttgtaccagtcattccacctgaattaagaccgcttgtcccattggacgggggccgt
tttgccacatcagatctcaatgatttgtaccgtcgggtcatcaaccgtaataaccggttg
aaacggttaatggaattgcgtgcaccggatattatcattcgtaacgaaaaacgtatgttg
caggaatctgttgatgcgttgtttgataatggacgtagaggacgggcaattacaggggcg
aataaacgaccattaaaatccttggcagatatgcttaaaggaaaacagggacgtttccgt
caaaacctgcttggtaaacgtgtggattattctggacgttcagtgattgtggttggtcct
gagctaaaattgcatcaatgcggtttgcctaaaaaaatggcattggaattgttcaaacca
tttatatattccaagcttgaaaaatatgggcatgcgacgaccattaaggcagctaagcgt
atggttgagaaagaacgcccagaagtttgggatattattgaagaggttattcgtgaacat
cctgtcatgcttaaccgtgcaccaactttacaccgcttgggtattcaagctttcgaacct
gttttgattgagggtaaagcgattcagttgcatccattggtatgtactgccttcaatgca
gattttgacggtgatcagatggcggttcatgtgccattgagtttggaagcacagctcgaa
gcacgtgttttgatgatgtccacaaataatattcttagtcctgctagtggtaagcctatt
attgttccatctcaggatattgtattggggctgtattatctaagtctggaaattcctgaa
tttaaattaactcccgatcaatccgaatatgattctgaaggtcatcttattaaaaagggt
gcacctctttttgcgaatattggtgagattgaacatgcattgtcatccagaatcttgaag
cttcacgataaaattcgttgtcgttttcaaacaaagaatgcggatggtgagctagtttat
caaaaggtagtgacaaccgcaggtagaatgctgatttcacagattcttccaaaacaccca
gcaatcaatttttcattgatcaatcaacaattaacgaaaaagacaatttcagatattatc
gatattgtctatcgtcattgtggtcagaaggaatgtgtgatttttgcagatcgtatgatg
ggactaggattctcttacgctgctaaagctggtatttcctttggtaaggatgatatgatc
attcctgatgcgaaaaaggaactggtcgccaagacaaccgaagaggttaaggagtttgaa
cagcaatatcaggacggtttgattacagcaggagagcgttataacaaagttgttgatgcc
tggtcacgttgtacggatgaggttcaggcagcgatgatgaaaaagatttcgcatgtagag
cctggtcaacccatcaactctgtctggatgatgagccattctggagctcgtgggtcccca
gcccagatgaagcagttggccggtatgcgtggtctgatggcaaaaccgtcaggtgaaatt
attgaacaacctattattgccaacttcaaggaaggtctttctgttcttgattactttacg
tcgactcatggtgcacgtaaaggattggctgatacggccctgaaaactgcaaactctgga
tatcttactcgtcgtctggttgatgttgctcaggattgcattattattgagccagattgt
ggaacagaacgcggattggttgttcgtgcggtaatggatggtggtgaggttatttcttca
cttgcagaacgtattcttggacgtacattggcggcagatgtaactgatccagcaactggt
aaaattctttatcctcgtaacacgcttctggaggaggccgaggttgaggcgatcgaaaag
gccaatgttgaaagtgtgatgattcgttctgttttaacctgtgacagtcaggttggcgta
tgcgctcattgttatggtcgtgatcttgctcgcggaactcccgttaatataggagaggct
gtcggtgttattgctgctcagtcaattggtgagcctgggactcagctgacaatgcgtaca
ttccatattggcggtgcagcacaaaaaggtgcagaacaatctatggttgaatcctcccgc
gatggcaagatcaagattgtaaatctgaatgttgttcaaaacagtcagggatttgacatt
gtcatgtccagaaactgtgaaattatcctgttggatgataatggaattgaacgcgctcat
taccgtattccctatggtgcacgtttgcttgctaaaaatggatcgaatgtcaagcgtcat
cagaaaatggcagaatgggacccatataccctacctattattactgaaaaatcaggtaca
attgagtatcaggatctgattgaaggtatcacactggttgaacggatggatgaagtcacg
ggtctttcttcaaaagttgttgttgactataagcaaacaagtaaatctcgtgatttgagg
ccacgcttgcagttaaaggattcaaatggggaagttatgaagttggggaacggtaatgac
gcacgttacttcttgtctccagattccctgctttctgtggaaaatggggcgcaggttaat
gccggtgatgtcttggcacgtattccaagagaaggttccaagacacgtgacattaccggg
gggcttccacgggtggctgaacttttcgaggctcgtcgtccgaaagatcatgcgattatt
gccgaaaatgatggtgtggttgaattcggaaaagattataaggcaaaacgtcggatcgtt
gtacgtaatgaggatgctggtgaagaaacagaatatttgattcctaaaggaaaacatatt
tctgtacaggaaggtgactttgtccgtaagggcgatcctcttgttgatggaccacgtgtt
cctcatgatattttaaaggttcttggaattgaagccttgtcggattatctgattgatgaa
attcaaagtgtttatcgtcttcagggtgtgaagatcaatgataaacatattgaagtgatt
gttcgtcaaatgctgcagaaaattgaggtgacggatccaggtgatacgacttatttaatt
ggtgaaactgtagatcgcttggaatttgaacaagaaaatatcaaacggatgaacgccaac
gagcgtccagcaactggttcaccagttttacagggtatcaccaaagctgcgttacaaacc
aaatcctttatttcagcggcttccttccaggaaacaactcgtgtattgacagaggccgca
tctgcggggaaggttgataccttgatgggattaaaggagaatgtaatcgtcggacgtctt
gttcctgcaggaacgggtagtgttatgaacagattccgtgccatggcttattcaagagat
agacagcgaattctggatgcaaataagatgaatgatgaagcggaaattgaactttcttct
gttacatcagaaaataatgaaataaaggacgtgactcaggtcactgaataa
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