Commensalibacter melissae AMU001: D9V35_08420
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Entry
D9V35_08420 CDS
T05684
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
coq
Commensalibacter melissae AMU001
Pathway
coq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D9V35_08420 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coq03019
]
D9V35_08420 (pnp)
03016 Transfer RNA biogenesis [BR:
coq03016
]
D9V35_08420 (pnp)
Enzymes [BR:
coq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
D9V35_08420 (pnp)
Messenger RNA biogenesis [BR:
coq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D9V35_08420 (pnp)
Transfer RNA biogenesis [BR:
coq03016
]
Prokaryotic type
tRNA degradation factors
D9V35_08420 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
DUF7867
KH_PARP14_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AYN87507
LinkDB
All DBs
Position
complement(1854373..1856541)
Genome browser
AA seq
722 aa
AA seq
DB search
MFKYYRKEIEWGGRPLILETGKIARQADGAVMATYGGTTVLCTAVGNKKANPDQDFFPLT
VHYQEKAFAVGKIPGGFFKREGRASEIETLISRLIDRPIRPLFPDNFCNEVQVIATVLSH
DMENDPAIVAMIGCSAALTLSGIPFFGPIAGCRVGYIDNEYVLNPVLAEMDQTKLDLVVA
GTSEGVLMVESEAQELSEEAMLGAVNFGHEACQPVIDAIIALAEHAARQPWELSEPTAEE
KKLKTRIDKIGRKPLAEAYKEKEKQKRYTLLNAARTKIIDKLVEEEFDTAKAGSLIDKLE
ADIVRNSVLKTGLRIDGRDLTTIRPIISEVGVLPRTHGSALFTRGETQALVVTTLGTTQD
EQVVDALEGEYRSNFMLHYNFPPYSVGECGRLGSPGRREIGHGKLAWRAIHPLLPSKEKF
PYTMRVVSEITESNGSSSMATVCGTSLSLMDAGVPLERPVAGIAMGLIKEKKGVAVLSDI
LGDEDHLGDMDFKVAGTEVGVTALQMDIKITSITPAIMEQALEQAREGRIHILGEMAKAL
TESRNDIAENAPHVIIMNVPKEKIRDIIGSGGKTIREIVEYAGCKIDIDDDGTIQIAVTS
NEQAEKAKERITAIIAEPEVGRIYTGKVVKVADFGAFVNFMGARDGLVHISELSAGRVGR
TSDVVKMGDTVKVKVVGFDDRGKIKLSMREVDQETGTDISEVVGVKNSSSSRNRNDNQSK
RS
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaatattatcgtaaggaaattgaatgggggggacgtcctcttattctggaaaca
ggtaaaatagcgcgtcaggcagatggtgcagtgatggccacttatggcgggactacagta
ttatgtacagctgttggaaataagaaagccaatccagatcaggatttctttccattaacc
gtgcattatcaggaaaaggcttttgcagttggaaaaattcctggcggttttttcaaacgt
gaggggcgcgcttctgaaatcgagacattgatctctcgacttattgatcggcctattcgt
ccattatttcctgataatttttgtaatgaagtgcaggttatagcgactgttttaagtcat
gatatggaaaatgatcctgccattgttgccatgattggctgttctgcagcgctgaccctg
tccggtattcctttctttggacccattgcgggttgccgggttggatatattgataatgaa
tatgttctaaatccggttttggcggaaatggatcaaaccaaattggacttggttgtggcg
ggtacttccgaaggggttctgatggttgaatccgaagcccaggaattaagtgaagaagca
atgttgggggctgttaattttggtcacgaggcctgtcagcctgttattgatgcaattatc
gctttggccgagcatgctgcccgtcaaccttgggaattgtctgaacctactgcagaagag
aagaaattaaaaactcgtattgacaagattggacgcaaacctttggcggaagcctataag
gaaaaggaaaagcaaaaacgttacactttactgaatgcggcacgtaccaaaattattgat
aagcttgttgaggaagaatttgatacagccaaggcgggttccttgattgataaattggaa
gccgatattgttcgtaattcagtgttaaagacaggattgcggattgacggacgtgattta
accacgattcgacccattatcagtgaggttggtgttttacctagaacacacggatccgct
ctttttacccggggtgaaacgcaagctctggttgtgacaactttaggtacaactcaagat
gaacaggttgtggatgcgttagaaggggaatatcgttctaatttcatgttgcattataat
tttcctccttattctgtgggggaatgtggacggttgggttcacctgggcgtcgtgaaatt
ggtcatggaaaactggcatggagagctattcatcctctgttgccaagcaaggaaaaattt
ccatataccatgcgtgtagtttctgaaattacggaaagtaacggttcgtcctctatggct
acggtttgtggaacctctttatccctgatggatgcaggtgtgccactggaacgtcctgta
gcgggaattgccatgggattgatcaaggagaaaaagggtgttgctgtattgagtgatatc
cttggtgatgaagatcatctgggagatatggattttaaagttgctggtactgaagttggt
gtcaccgctttacaaatggatattaaaattacatccattacaccagcaattatggaacag
gccttggaacaggctcgtgaaggaagaattcatattttgggtgaaatggcaaaagccttg
acagaaagccgtaatgacattgcagagaatgcaccacatgtaatcattatgaatgtgccc
aaggaaaagatcagggatattattggatctggcggtaaaacaattcgtgaaattgttgaa
tatgcaggttgtaaaattgatattgatgatgatggtacaatacaaattgctgttacatcg
aatgaacaggcggaaaaagccaaggagcgtatcactgcaatcattgctgaaccagaagtt
ggccgcatttatacaggaaaagttgtaaaggttgccgatttcggagcatttgtcaatttt
atgggggctcgtgacgggctagttcatatttctgaattatcagccgggcgtgtcggtcgt
acaagtgacgttgtcaaaatgggggatactgtcaaggtaaaggttgtaggttttgatgat
cgaggaaaaatcaagctttccatgcgtgaggtagatcaggaaacaggtactgacatcagt
gaggtcgttggagtcaaaaacagctcgtcatctcgtaatcgcaatgataaccagtccaaa
cgctcatag
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