Chryseobacterium oranimense: N0B40_05340
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Entry
N0B40_05340 CDS
T08904
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
cora
Chryseobacterium oranimense
Pathway
cora03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cora00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N0B40_05340 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cora03400
]
N0B40_05340 (uvrA)
DNA repair and recombination proteins [BR:
cora03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N0B40_05340 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N0B40_05340 (uvrA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
UvrA_DNA-bind
SMC_N
nSTAND1
AAA_29
AAA_16
RsgA_GTPase
DnaJ_CXXCXGXG
nSTAND3
AAA_21
AAA_25
nSTAND6
ATPase_2
AAA_15
Motif
Other DBs
NCBI-ProteinID:
UWX61705
LinkDB
All DBs
Position
1141240..1144071
Genome browser
AA seq
943 aa
AA seq
DB search
MSKSTEYIEVYGAREHNLKNINVKIPRNELVVITGLSGSGKSSLAFDTIFAEGQRRYIET
FSAYARQFLGGLERPDVDKIEGLSPVIAIEQKTTNKNPRSTVGTVTELYDFLRLLFARVS
DAYSLSTGKRLVSYTEDQILETIKENYKKEKIMLLAPVVRSRKGHYHELFVQMAKKGYGQ
ARIDGELQDIEYDLKLDRYKTHDIDIVIDRWIIGENASEARMEKSLRTAMEMGEGIIGIQ
KLGSADIEYFSKNLMDAETGHSLALPEPNTFSFNSPKGSCPECKGLGTIKKINTDYFIDN
PKLSINQGGLLPLEDIKSNKWILSQIKNILEIFGLSMATPMKDIPEEALDYIYNGCHKEF
NKDLKYAGITKKIKISFDGLIAFMEEIIDEKESYEAVLLERHFTTEETCPECGGTRLQQA
SLSFKIDGKNIAEINALSLSDLKEWLSDVKDKFSEKHKIIAYEILKEIETRLQFLLDVGL
DYLSLSRSSKTLSGGESQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNERLINSLKNLR
DIGNSVLVVEHDKDMILEADEVLDIGPRAGKFGGEILWQGKPKDLLKADTITAQYINGKR
KIEVPSERRAGNGKNILLKGATGNNLKNVTLDIPLGKLVVVTGISGSGKSSLINGTLYPI
LNKHFYRAVQEPLPYKKIEGLENIDKIVDVDQTPIGRTPRSNPATYTGMFTDIRNLFAEL
PESKIRGYKPGRFSFNVKGGRCETCQGGGLKVIEMNFLPDVYVHCETCNGKRFNRETLEV
RYKGKSISDVLDMTIDEAVDFFQPIPKIFAKVKTLQDVGLGYITLGQQSTTLSGGEAQRI
KLATELSKRQTGNTLYILDEPTTGLHFEDVKILMDAINQLVELGNSFIIIEHNMDVIKLA
DHIIDVGPEGGKHGGQIVAQGTPEEIVKSKKSLTGKFLKRELE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatcaacagaatatatagaagtttacggagcacgtgaacacaaccttaaaaat
attaatgtcaagatccctcgcaatgagttggtggtcattaccggcctttccggaagcgga
aaatcatctctggcttttgataccatctttgcagaaggacagcgtcgttacattgaaaca
ttctctgcttatgcgcgtcagtttttgggcggtttggagcgtcctgatgtggacaaaata
gaaggactttctcctgttattgccatagagcagaaaacgaccaataaaaatcccagatcc
actgtaggaactgttacggagctgtatgactttcttcgtttgctgtttgccagggtttct
gatgcatactcgctttctacagggaagaggttggtaagctataccgaagatcagattctg
gaaaccatcaaggaaaactacaaaaaggaaaaaataatgcttcttgctcctgtcgtgcgt
tccagaaaaggacattatcacgagcttttcgtacagatggcaaaaaaaggctacggtcag
gccagaattgatggcgagctgcaggatatagaatacgacctgaagctggaccgttacaaa
acccacgatatcgatattgtgatcgaccgttggatcattggagaaaacgcttccgaagcc
agaatggagaaatccttgcgtactgcaatggaaatgggagaagggattatcggaattcag
aagctgggaagtgctgacatagaatacttctcgaaaaacctgatggatgcagaaaccgga
cattcacttgctcttccggaacccaatacattctctttcaactctccgaaaggaagctgt
ccggaatgtaaaggattaggaacgattaagaaaatcaatactgactattttattgataat
cctaaactttctattaaccagggcggattgctgcctctggaagacattaaatccaataag
tggatactgtcccagatcaaaaatattcttgagatttttggattgagcatggccacaccc
atgaaggatatcccggaagaagcattggattatatttataacggatgccacaaagagttt
aataaagacctgaaatatgcagggattaccaagaaaataaaaataagcttcgatggtttg
attgcctttatggaagaaatcattgatgagaaagaatcttatgaagcagtgcttctggaa
aggcattttaccactgaagaaacctgtccggaatgtggtggtacccgtcttcagcaagcg
agtttaagttttaaaatagacggaaagaatattgcagagatcaatgctttaagtttatct
gatttgaaagaatggttatcagacgttaaggataaattttcagaaaaacataaaatcata
gcctacgaaatcttaaaagaaattgaaacaaggcttcagttccttctggatgtaggtttg
gattaccttagcttaagcagaagctcaaaaaccctttcaggcggtgaatcccaaaggata
cgtcttgccacgcagatcgggtcacagcttgtcaatgtattgtatattctggatgaaccg
agcatcggtcttcaccagagggataacgagaggctgatcaactccttaaaaaacctcaga
gatatcggaaattctgtccttgttgtagagcatgacaaagatatgatcctggaagccgat
gaggtgctggatattggtccgagagctggaaaattcggaggagaaatactctggcagggc
aagcctaaagatcttttaaaagcagatactattacggcacagtacattaatggaaaaaga
aaaatagaagttccttcggaaagaagagccggaaacggtaaaaatatccttttaaaagga
gctacaggaaacaaccttaaaaacgttacccttgatatcccattgggaaaactggttgtg
gtaaccggaatttcaggaagcggaaaatcttctctgattaacggaactttgtatccgatc
cttaataaacatttctacagagcagttcaggaacctcttccatataaaaagattgaaggc
cttgagaatattgataaaattgtagatgtagaccagacgccaatcggaagaacaccccga
tcaaaccctgcaacctatacaggaatgtttacagacatcagaaacctgtttgcagaatta
cccgaaagtaaaatccgtggttataagcctggaagattttctttcaatgtaaaaggagga
agatgtgaaacctgtcaggggggaggattgaaagtaattgaaatgaactttcttcccgat
gtatacgttcattgcgaaacctgtaacggaaaacgtttcaacagagaaacactcgaagta
cgctacaaaggaaaatcgatctccgatgtactggatatgacgattgatgaagccgtagac
tttttccagccgatccctaaaatttttgctaaagtaaaaacacttcaggatgtaggattg
ggatatattaccctagggcagcagtctaccacactttccggaggagaagcacaacgtatc
aagctggcgacagaactttcaaaaagacagaccggaaacacactttacattctggatgag
ccaacaaccggactgcattttgaagatgtaaagatcctcatggatgccatcaaccaactg
gtggagctaggaaactcattcatcatcattgaacataatatggatgtgattaaactggca
gaccatatcattgatgttggtcctgaaggcggaaaacatggcggacagatcgtggcccag
ggaactcctgaagagattgtgaagtcgaagaaaagtttaacaggaaaattcctgaagcgg
gaactggaataa
Chryseobacterium oranimense: N0B40_06890
Help
Entry
N0B40_06890 CDS
T08904
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
cora
Chryseobacterium oranimense
Pathway
cora03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cora00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N0B40_06890 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cora03400
]
N0B40_06890 (uvrA)
DNA repair and recombination proteins [BR:
cora03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N0B40_06890 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N0B40_06890 (uvrA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
UvrA_DNA-bind
AAA_21
AAA_29
AAA_16
RsgA_GTPase
DnaJ_CXXCXGXG
nSTAND3
Viral_helicase1
AAA_22
nSTAND1
AAA_23
AAA_25
AAA_33
NACHT
SLFN-g3_helicase
cobW
NB-ARC
Arteri_nucleo
Motif
Other DBs
NCBI-ProteinID:
UWX62009
LinkDB
All DBs
Position
1455710..1458502
Genome browser
AA seq
930 aa
AA seq
DB search
MTKTIEIDIKKQIFVKNAHLNNLKHIDVLIPKNKLIVITGVSGSGKSSLAFDTIYAEGQR
RYVESLSSYARQFLGKLEKPKVDDIKGLAPSIAIQQKVISSNPRSTVGTSTEIYDYMKLL
FARIGKTFSPVSGEEVKKDSVSDVIDFIKASKKETSFLLTAPLEYDAANFKETLNVLKLA
GFTRLEINGNVAGIEDLESFGFTPEKGMIINLVIDRFSYEEDESFLQRLADSIQMAFYEG
HGYCALKNADSGKVKEFSNKFELDGMEFLEPNVHFFSFNNPYGACPACEGYGKVIGIDED
LVVPNKTLSVYEDAIVAWRGESMSEWKKAFIKKAGDFPIHKPYHQLTKEQKSFLWKGDGK
SSFPSINNFFKMLEENLYKIQYRVMLSRYRGKTLCPTCEGLRLREETSWVKVDGHNIQSM
IELPLDELYPLIDGLKLSEHDQDVAKRLLYEIKTRIEFLLKVGLGYLTLNRTSNTLSGGE
SQRINLATSLGSSLVGSIYILDEPSIGLHSRDTENLIGVLKNLRDLGNTVIVVEHDEDVM
KAADYIIDIGPEAGYLGGDLVFAGDYNDLKNADTLTSKYLTGRMEIEVPKKRRKAKEWIH
IKGARQNNLKNIDVDVPLESLTVISGVSGSGKSTLMKEILTNDIQIQLGMGGKKGDYDSV
EFPKKLIKNIELIDQNPIGKSSRSNPVTYLKAYDDIRDLFARQKVSKMMGYKPKHFSFNV
DGGRCDECKGEGVINVSMQFMADIELECEVCKGTRFKNEILEVKFDEKSISDILHMTVDE
ALEFFKDNNEEKIVTKLKPLQEVGLGYLQLGQSSSTLSGGEAQRVKLASFLVKGVTTDKT
LFIFDEPSTGLHFHDIQKLLKSLQALIDLGHSVIVIEHQPDIIKCADYIIDIGPEAGKYG
GEVVFAGTPEDLAKDKKSHTAKYIKEKLEN
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaacaatagaaatagatataaaaaagcagatcttcgttaagaacgcccatctt
aacaatctgaaacatatagacgttctcatcccgaaaaataaactgatcgtgattacagga
gtttccggaagcggaaaatcttccctggcattcgatactatttatgccgaaggacaaagg
agatatgtggaaagcttaagttcatatgcccgacagtttttaggaaaactggaaaaacca
aaagtggacgatatcaaaggacttgccccttctattgccatccagcagaaggtgatttct
tccaacccccgttctacggtaggaacttctacggaaatctatgattatatgaagcttctt
ttcgcaaggatcgggaaaacattttccccggtatcaggtgaggaagtaaagaaagattcc
gtttcggatgtgatagattttatcaaagcttccaaaaaggagacttcatttttactgacg
gctcctttggaatatgatgccgccaattttaaagaaactttgaatgttttgaaattagca
ggtttcacaaggctggagatcaacgggaacgttgccggtatcgaagacctggaaagcttt
ggatttacccctgaaaaaggaatgataatcaatctcgtgatcgatcgtttttcttatgaa
gaagacgaaagcttccttcagagactggcagactctattcagatggcattttacgaaggt
catggttactgtgccctgaagaatgctgattccggaaaagtaaaagaattttccaataaa
tttgagcttgacggtatggaatttctggagccgaatgttcattttttcagctttaataat
ccatacggagcatgtccggcatgtgaaggatacggaaaagtaatcgggatagatgaagat
cttgtagttccgaataaaactttatccgtttatgaggatgcaatagttgcctggagagga
gaaagcatgagcgagtggaaaaaagcattcatcaaaaaagccggtgatttcccgatccac
aaaccttatcaccagctgactaaggaacagaaaagcttcttatggaaaggagacggaaaa
agcagtttcccttctattaataatttcttcaaaatgcttgaagaaaacctgtataagatc
caataccgcgtaatgctgtccagatacaggggaaaaacactgtgtcctacttgtgaaggc
ttaaggcttcgtgaagaaaccagctgggtaaaagtagacggacacaatatccagtctatg
atcgagcttccgctggatgagctgtatcctttaatagatggcttgaagctttccgaacac
gatcaggacgttgccaaaagattattgtacgaaatcaaaacccgtattgagtttttatta
aaagtaggtttaggttatttaaccttaaacagaacctccaataccctttccggtggtgaa
agtcagagaattaatcttgccacaagtttgggaagttccctggtaggatccatctatatt
ctggatgaaccttccatcggactgcattcaagggatacggaaaacctgatcggggtgtta
aaaaatctccgtgacctgggcaataccgtgattgtagttgaacatgatgaagatgtcatg
aaagctgccgactatattattgatatcggcccggaagccggttatcttggaggcgatctg
gtatttgccggagattataatgatcttaaaaatgcagatacacttacctcaaaatatttg
accggaagaatggaaattgaagtgcctaaaaaacgcagaaaggccaaggaatggatccat
atcaaaggggcaagacaaaataatctgaaaaatatagatgtagacgttccactggaaagc
cttacggtgatctccggcgtttccggaagcggaaaatctacactgatgaaggaaatttta
accaatgacatccagatccagctcggaatgggtggcaaaaaaggagattatgactctgta
gaattccctaagaaactgattaaaaatattgagctgatcgaccagaacccgatcggaaaa
tcttcgagatccaatcctgttacctatctgaaagcatatgatgatatcagggaccttttt
gccagacagaaggtatcaaaaatgatgggttacaagcctaagcatttctctttcaacgta
gacggcggaagatgtgatgagtgtaaaggcgaaggagtgatcaatgtttccatgcagttt
atggcagacattgaacttgaatgtgaagtatgcaaaggaacccgtttcaaaaacgagatc
ctggaagtgaaattcgatgagaaaagcatttccgatatccttcatatgaccgtggatgaa
gcattagagttctttaaggataataacgaagaaaagatcgttaccaagctgaaacctctt
caggaggtaggattaggctatctgcagctcggacaaagctcttccaccctttccggcggt
gaagcgcagcgtgtgaagctggcctcattccttgtcaaaggggtaacaacagacaaaacg
ctgtttatcttcgatgaaccttctaccggacttcatttccatgatatccagaaacttctg
aaatctctgcaggcactgattgatctcggtcattctgtgattgttattgagcatcaaccg
gatattatcaaatgtgcagattatatcattgatatcggccctgaagctggaaaatacggt
ggtgaagtggtttttgccggaactccggaagatcttgctaaagataagaagtcccataca
gcaaagtatatcaaggaaaaacttgaaaactaa
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integrated database retrieval system
