Chryseobacterium oranimense: N0B40_08340
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Entry
N0B40_08340 CDS
T08904
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cora
Chryseobacterium oranimense
Pathway
cora03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cora00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N0B40_08340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cora03019
]
N0B40_08340
Enzymes [BR:
cora01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N0B40_08340
Messenger RNA biogenesis [BR:
cora03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N0B40_08340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YibE_F
Motif
Other DBs
NCBI-ProteinID:
UWX62288
LinkDB
All DBs
Position
complement(1782237..1783595)
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AA seq
452 aa
AA seq
DB search
MEKLTFADFDLPVKILDVLADLELFEPTPIQEKSLGPILSGRDVMGIAQTGTGKTLAYLL
PVLKTWKYNKTGNPTVLILVPTRELVVQVAEIVEKLTENMTARVIGIYGGKNINTQKLLF
NDGCDILVGTPGRVMDLAIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMKPKRQ
NILFSATMTEAVDEMLDQYFASPVEISLAKSGTPLEKIEQTGYKVENFNTKINLLEHLLK
NNEEMSKVLIFTNNKKNSDLLFAKIDELFPEQFDVIHSNKSQNYRLKAMKRFENEEIRGL
ITTDVMARGLDISNITHVINFETPEIPEQYIHRIGRTGRADKDGKAVTFVTKKEEASILD
IELLMDKDLKFADFPAEVKINPKKIASEEDVIIMKNPAQVKLYEGGGAFHEKKDKNKKEN
WGGPSKRKAPKKFGANRAQQKSISASKSKKKK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaactcacttttgcggattttgacctgccggttaaaattcttgatgttttagcg
gatctggaattgttcgaacctacacctattcaggaaaaaagccttgggcctatactttcg
ggaagagatgtaatgggaattgcacaaaccggaaccggaaaaacattagcctatcttctg
cccgttcttaaaacatggaaatacaacaaaacagggaatcctactgtcttgatccttgtt
cctacaagagaactggtggtacaggttgctgaaattgttgagaaactgacagaaaatatg
accgcaagggtgatcggaatatatggagggaaaaatatcaatacgcagaaactgttattt
aatgacggatgtgatatcctggtaggaactccgggaagggtaatggaccttgccattgat
aatgcaatttcattgaaagaagtgcagaagctgatcattgatgaatttgatgaaatgctg
aacctgggtttcagaccgcagcttacccatattttcgaaatgatgaagccgaagagacag
aatatccttttctctgctaccatgacagaggctgtggatgagatgctggatcagtacttt
gccagtcctgtggaaatttctttggcaaaatcaggaacacctcttgaaaaaatagaacag
accggatataaagttgaaaactttaataccaagatcaatcttcttgagcacttactgaag
aacaacgaagagatgtccaaggtgttgattttcaccaataacaagaaaaattctgatctc
ctgtttgctaaaattgatgagcttttccctgaacagtttgatgtgattcactcaaacaaa
tctcagaattacaggcttaaagccatgaaaagatttgaaaatgaagagatcagagggctg
attactaccgatgtaatggccagaggtcttgatatttcaaatattacccacgttatcaac
tttgaaacccctgaaattcctgaacagtatattcacagaataggaagaacgggtagggcg
gataaagatggtaaagcggttacttttgtgactaaaaaagaagaagcttccattcttgat
atcgagcttttaatggacaaagaccttaagtttgccgatttccctgcagaggtgaaaata
aatcctaaaaagatcgcttctgaagaagatgtgattattatgaaaaatcctgcgcaggta
aaactgtatgaaggaggaggagctttccacgagaaaaaagataaaaacaagaaagaaaac
tggggaggtccttcaaaaaggaaggcaccgaagaaatttggagccaacagagcccagcag
aaatctatatctgcttcaaaatctaagaaaaagaaataa
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