Chryseobacterium oranimense: N0B40_15965
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Entry
N0B40_15965 CDS
T08904
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cora
Chryseobacterium oranimense
Pathway
cora03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cora00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N0B40_15965 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cora03019
]
N0B40_15965 (rnr)
03016 Transfer RNA biogenesis [BR:
cora03016
]
N0B40_15965 (rnr)
Enzymes [BR:
cora01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
N0B40_15965 (rnr)
Messenger RNA biogenesis [BR:
cora03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N0B40_15965 (rnr)
Transfer RNA biogenesis [BR:
cora03016
]
Prokaryotic type
tRNA degradation factors
N0B40_15965 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
S1CSD-TOTE-2
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
UWX59902
LinkDB
All DBs
Position
3464616..3466769
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AA seq
717 aa
AA seq
DB search
MPRKGKYISHKNEQKLIEIGRQILRFMNANASKIYNYKQIADGIDYKNPRQREQVIQALH
KLQGSEKIKEVEKGKYIVNLKIAGTLTGTIDFNQSGNAYVSVEGVEDDIFIHSKNVKDAL
QGDKVLIITYHFKGKKLEGSVLEVLERTRTEFVGTFQLVAHKDFGFVVCDKKTINTDIFI
PKTKFGGAENGDKVIVKMTEWKPGDKNPEGEIIQVLGAPGEHETEIHSILAEYGLPYEFP
QEVELDADKIDRRITDEEAAKRWDMRDICTFTIDPKDAKDFDDALSIRKLENGFWEIGVH
IADVSHYVVPGTILDDEAYKRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFQ
LNDKAEIQKQWFGRTVIHSDRRFTYEEAQERIETGEGDLAEEINTLDRLAKIMRDQRIKN
GAITFDRSEVRFNLDENSEPVGVYFKISKDSNHLIEEFMLLANKKVSEFVSLTHKGGVTN
NTFIYRVHDDPDPAKLEALRDFVSTFGYKMNLDNTKKVAESLNNLLHDVKGKGEENMIET
LAMRSMSKAVYSTEPIGHYGLGFEYYSHFTSPIRRYPDLLAHRLLQHYLDGGKSPSKGEL
EEKAKHCSAMERLAADAERDSIKFMQVKFMEKHLGETFSGVISGVAEFGFWVEIPENGAE
GLIKLRDLVDDSYSYDGKTHAVYGNRTGKKYQLGDEVRIKVVKANLIQKQLDFKIVD
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgccaagaaaaggtaaatatataagccataaaaatgaacagaaactcatagagattgga
agacagatcctgcgtttcatgaatgctaatgcgtcgaagatctataattataagcagatc
gcagacggaatagattataaaaatccgcgacagagagagcaggtaatccaggctcttcat
aagcttcaggggtctgaaaagatcaaagaagtggaaaaaggaaaatacatcgtcaacctg
aagatcgcaggaactttaacaggaactatcgatttcaaccagtccggaaacgcttacgtg
agtgtagaaggagtggaagatgatatttttattcactccaaaaacgtaaaagatgcgcta
cagggtgataaagttttgatcatcacctatcacttcaaaggaaaaaaactggaaggctcc
gtactggaagttctggagagaacaagaactgagtttgtaggaacattccagctcgttgcc
cataaagattttggatttgtggtttgtgataaaaaaacaatcaatacggatatttttatt
ccgaaaacaaaattcggaggagctgaaaacggcgataaggttatcgttaaaatgactgaa
tggaaacccggagataaaaatccggaaggagaaatcattcaggtccttggagctccgggc
gagcatgaaacagagatccactctattcttgcagaatacggactgccttacgaattccca
caggaagtggagcttgatgcagataaaatagaccgaagaattacagatgaggaagcagca
aaacgttgggatatgcgtgatatctgcacattcaccatcgaccctaaggatgcaaaagac
tttgatgatgcgctttccatcagaaaactggaaaacggattctgggaaatcggtgttcac
attgcagacgtttcccattacgtggttccggggacaatcctggacgacgaagcctacaaa
agggcaacttcggtttatcttgtagaccgtgtagttccgatgcttccggaagttttaagt
aatgacgtatgttcccttcgtcccaatgaagataaatatactttctcagcagttttccag
ctgaatgataaagcagagatccagaaacagtggtttggaagaacggtgatccattcagac
agaagatttacgtatgaagaggcccaggaacgtatagaaacaggagaaggagatcttgca
gaagaaatcaatacactggacaggctggcgaaaattatgcgtgatcagcgtattaaaaac
ggagccattacattcgacagaagcgaggtaagattcaatcttgatgaaaacagtgagcct
gtaggggtttactttaaaataagcaaggattccaatcacctgatcgaagaattcatgctg
ttggccaataaaaaagtgtccgaatttgtatcattaacccataaaggaggtgttacaaac
aatacctttatttacagggtgcatgatgatccggatcctgcaaagctggaagcattaaga
gattttgtatctactttcggctataaaatgaatctcgacaataccaagaaagttgcagaa
tcattgaataaccttcttcatgatgtgaaaggaaaaggcgaggaaaatatgatcgaaacg
ctggcaatgagaagtatgagcaaagcggtatactctacagaacctatcggtcattacggt
ttaggttttgaatactacagtcacttcacctctcctatcagacgttatcctgaccttcta
gcccaccgattgcttcagcattatctggatggaggaaaatctccaagcaaaggggaactt
gaagaaaaggctaaacactgcagtgcaatggaaagactggctgctgatgcagagagagat
tctattaaatttatgcaggtgaaatttatggaaaaacatcttggagaaaccttcagtggt
gtcatctcgggtgttgcggaattcggtttctgggttgaaatccctgaaaacggtgccgaa
ggactcatcaaattaagagatcttgtagatgattcctattcctatgacggtaagacccat
gcagtatacggaaacagaaccggtaaaaaatatcagctgggcgatgaagtgaggattaaa
gtagtaaaagcaaaccttattcagaaacagttggactttaagattgttgattaa
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