Chryseobacterium oranimense: N0B40_16975
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Entry
N0B40_16975 CDS
T08904
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cora
Chryseobacterium oranimense
Brite
KEGG Orthology (KO) [BR:
cora00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cora03016
]
N0B40_16975
Enzymes [BR:
cora01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N0B40_16975
Transfer RNA biogenesis [BR:
cora03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N0B40_16975
Prokaryotic type
tRNA splicing ligases
N0B40_16975
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UWX60086
LinkDB
All DBs
Position
3680853..3682244
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AA seq
463 aa
AA seq
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MGNLKLKGKDILKLGYPNNQSVNVALEVMKRNFATKNIHHVKSILKEILLNPEDFEKDLT
FGQIAESLLSSRKTEKRMLNTQRASFRIFGNNISEEAKNQLYTALKLPISMQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDIPVSYLDGARDKYEKALAEHTKFG
MYETHKSHIDHEIFERDTFDMIPVLRRLKGKAIKQMGSSGGGNHFVEFGEVEITEEDDQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRVAADQCPLPKEAQQFAWLDLSTHLGLEYWTA
MNLAGDYASACHDDIHRRLVKAVGGRVKARIENHHNFAWKEIHNGKEVIVHRKGATPANV
NELGMIPGSMTAKGFIVRGKGNPDSLNSASHGAGRAHSRGECRSLFTQNDIKKELKLKKV
TLMGGNTEEAPMAYKDIHEVMNAQSELVDILGTFQPRIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaactaaaaggaaaagatatattaaaactcggttatccgaataatcaa
agtgtcaatgtggctttggaggttatgaaaagaaattttgcaacgaagaatattcatcat
gtaaaatctattttaaaagaaattctcctgaaccctgaagactttgaaaaggacctgact
ttcggacagattgcagaatcgctgctctcatccagaaaaacagaaaaaagaatgctcaat
acccagcgcgcttccttccggatctttggaaacaatatttctgaagaagcaaaaaaccag
ctgtacaccgctttaaagctgccgatttcgatgcagggggctttaatgcccgacgcccat
agcggttacggacttccgataggaggtgttctcgcagtagaaaatgcggtgatcccttat
ggtgtgggaatggatatcggctgcaggatgagcctcagtattctggatataccggtttca
tatcttgacggagcaagggacaaatatgaaaaagcccttgcagagcacaccaaattcggg
atgtacgaaacccataaatctcatattgatcatgaaatctttgagagagataccttcgat
atgatcccggttttgagaagattaaaaggaaaagccattaagcagatgggatcttccgga
ggcggaaatcatttcgtagaattcggagaggtggaaatcacggaagaagatgaccagatt
gggttaccgaaaggaaaatatctgggaatcctctcacacagcggttctaggggattaggg
gcggaaattgctcaatattactcaagagtagctgcagatcagtgtccgctgccaaaagaa
gctcagcagttcgcctggctggatctcagtacccatctcggcctggaatactggactgca
atgaatcttgccggagattacgcctctgcctgtcacgatgacatccatagaagactggta
aaagcggtcggcggaagagtgaaggcaagaattgaaaaccatcacaattttgcatggaag
gagattcataacggaaaagaagtgattgttcacaggaaaggagctactccggctaatgta
aacgaactgggaatgattcctggttccatgacggctaaaggttttatcgttcgtggaaaa
ggaaatccggattcattgaattcggcatcacatggagcggggagagcccactcaagagga
gaatgcaggagccttttcactcagaatgatatcaaaaaagagctgaagctgaagaaagtt
actctgatgggagggaatacggaagaagcaccgatggcttacaaagacattcatgaagta
atgaatgctcaaagcgaattggtggatattcttggaacatttcagcccagaattgtgaga
atggacaagtaa
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