Corynebacterium sp. Z-1: RIU96_06215
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Entry
RIU96_06215 CDS
T11129
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
core Corynebacterium sp. Z-1
Pathway
core03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
core00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RIU96_06215 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
core03400
]
RIU96_06215 (mfd)
Enzymes [BR:
core01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RIU96_06215 (mfd)
DNA repair and recombination proteins [BR:
core03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RIU96_06215 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
RecG_dom3_C
CbiX
Motif
Other DBs
NCBI-ProteinID:
WNI11843
LinkDB
All DBs
Position
1263330..1266905
Genome browser
AA seq
1191 aa
AA seq
DB search
MTTTVPALGGLLTVALTDPKLKGLLSNIGQDHLHVMGIDQTRPWAAAALSRELPVLLVTA
TGHEAEDLTAELAALIGPEKVAHFPALETLPHERLSPAADVVGRRFKVLHEMPRVIVAAA
RAVCQPVLPVIDPIVIARDNEFDFTQLTESIARFAYEHVDMVAKRGEFATRGGLIDVFPT
TAEHPVRIEFWGDEVTDIRTFAVADQRGIDEVDSVELFPARQLLIDDPVAARADELARAH
PQNATLVQMLTRISQGHHADGMEALIPALTDKPFQVLPELLPKGSIVLVTAPEKVRARIE
DLEVTDKEFLEAGWEAAAMGAEGPVAVEGLDVSASSYRSFESLRVSTLKAGSSWWTFAPP
GMFAADDTATLPLEFEPAPAPKGDPKAIEQLFATVKLHVQSNNGTAAFVAPAKGTVERFA
ERLREHGISARIASDGLEPVTGQVTLYQALSHAGLVFPGPNMVVVTETDVTGNRVGDIAG
AKRRAPRRRNRVDPLALSPGDYVVHETHGIGRFVKMAERTVHTGDEDSRREYIVLEYQPA
KRGQPNDQLWVPMESLDLLSKYSGGEQPSLSKMGGSDWKSTKRKARAAVREIAAELVQLY
AKRQAAPGHAFAPDTPWQAEMEDNFPFVETEDQLLAIDAVKDDMEKPTPMDRVIVGDVGF
GKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYSTFSTRMDGFGVTIRELSRFTSAKES
KETLAGLADGSVDVVIGTHRLLATGVQWKNLGLIVVDEEQRFGVEHKEHIKALKSHVDVL
TMTATPIPRTLEMSLTGIREMTSITTPPEDRHPVLTYVGPQEDKQIAAAIRRELLRDGQI
FYIHNKVADIEKAARRVRELVPEARVVVAHGQMSEQLLEQTVQGFWNREYDVLVCTTIVE
TGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRDRAYAYFLYPKDKTLTETSYDRLAT
IAQNNDLGSGIAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVRLVGEAVDTYKALMTG
ETVDATDQGPKEIRIDLPVDAHIPDTYVNSERLRLEIYRKLAESRNDADLATVTEEMVDR
FGPLPREVEHLVAVARLRQQARVAGVSDILVQGSRIKFQPVELQDSKQVRLKRLYPGANY
RAAAKALQVPLPRAAAGVNQPTLRDTELVQWVSDFLADMFGVDKKVVTASE
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccaccgtgcccgcattgggtgggctgcttactgttgcgctgacggacccgaag
ctcaagggcctgctgagcaatatcggccaggatcatctccacgtcatggggatcgaccag
acccgcccgtgggccgcggccgcgttgtcgcgcgagctcccggtgctgttggtcaccgcg
acggggcacgaggccgaggatctcaccgcggagttggcggcgctgatcggaccggagaag
gtcgcgcatttccccgcgctggagacgctgccgcacgagcggctctccccggcggcggat
gtggtgggcaggcgcttcaaggtcttgcacgagatgccgcgggtgatcgtcgcagctgcg
cgcgcggtgtgccagccggtgttgccggtcatcgacccgatcgtgatcgcccgcgataac
gagttcgacttcacgcagctgacggagtcgatcgcgcgattcgcgtacgagcacgtcgac
atggtggcaaagcgcggtgagttcgcgacccgcggcggcctaatcgacgttttcccaacc
accgccgagcacccggtgcgcatcgagttctggggcgacgaggtcacggacatccgcacc
ttcgcggtggcggatcagcgcggcatcgacgaggtcgactccgtcgagcttttccccgct
cgccagttgcttatcgacgaccccgtggccgcacgcgccgacgagctcgcccgcgcgcac
ccgcagaacgccacgctcgtgcagatgctgacccggatttcccaggggcaccacgccgac
ggcatggaggcgctcatcccggcgctgaccgacaagcccttccaggtgcttcccgagctg
ttgccgaaggggtcgatcgtgctggtcacggcgccggaaaaagtccgcgcccgcatcgaa
gaccttgaggtcaccgacaaggagttcctcgaggccggctgggaggcggcggcgatgggg
gcggagggtcccgtcgcggtggaggggctcgacgtctcggcgtcgtcgtatcgctccttc
gagtcgctgcgcgtctcgacgcttaaggcgggcagtagctggtggacgttcgcgcctccc
ggcatgtttgccgcagacgacacggcgaccctgccgctggagttcgaacccgcgcccgcc
ccgaagggcgatccgaaggcgatcgagcagctcttcgccactgtcaagctgcacgtgcag
agcaacaacggcaccgccgccttcgtcgccccggccaaaggcacggtggagcgcttcgct
gagcggctgcgcgagcacgggatctcggcgcgcatcgcctcggacgggctcgaaccggtg
accggccaggtcacgctctaccaagcgttgtcgcacgcgggtttggtgttcccggggcca
aacatggtcgttgtcactgagaccgatgtgacaggtaaccgcgtaggcgatatcgcgggc
gcgaagcggcgcgccccgcggcggcgcaacagggtcgacccgctcgcgctgagccccggc
gattacgtggtgcacgagacccacggcattggccggtttgtaaagatggccgagcgcacc
gtccacacgggcgacgaggactcgcgccgcgagtacatcgtgcttgagtaccagccggcg
aagcgcggccagcccaacgaccagttgtgggtgccgatggagtcgctggacttgctgtca
aagtattccgggggcgagcagccgtcgttaagcaaaatgggcggctccgactggaagagc
accaagcgcaaggcgcgcgcggcggtgcgggagatcgcggctgagctggtgcagctttac
gccaagcgccaggccgcgccgggccacgcgttcgcgccggacacgccgtggcaggcggag
atggaggacaactttccgttcgtggagacggaggaccagctcctcgcgatcgacgcggtt
aaggacgacatggagaagccgacgccgatggatcgggtgatcgtgggtgacgtcggcttc
ggcaagaccgaggtcgcggtgcgcgcggcgttcaaggcggtgcaggacggcaagcaggtc
gcggtgctcgtgccgaccacccttctggcgcagcagcactattcgacgttctccacccgc
atggacggcttcggcgtgaccatccgcgagctgtcgcgttttacctcggcgaaggaatcg
aaggagacgctcgctgggcttgccgacggctccgttgacgtcgtcatcggcacccaccgc
ctgctggctaccggcgtgcagtggaagaacctgggcctcatcgtggtcgatgaggagcag
cgcttcggcgtcgagcacaaggagcacatcaaggcgctaaagtcacacgtcgacgtgctc
accatgacggcgacgccaatcccgcgcaccctggagatgtcgctgaccgggatccgcgag
atgacgtcgatcacgactccgccggaggaccgccacccggtgctgacctacgtcggcccg
caggaggataaacagatcgcggcggcgattcggcgcgagctgctgcgcgatggccagatt
ttctacatccacaacaaggtcgccgacattgaaaaggccgcgcggcgcgtgcgcgagctt
gtccccgaggcgcgcgtcgtggtggcgcacggccagatgtcggagcagctgctcgagcag
acggtgcaggggttctggaaccgcgagtacgacgtgcttgtgtgcaccacgatcgtggaa
acgggcctggatatcgccaacgccaacaccctgatcgtggaaaacgcccaaaacatgggc
ctgtcccagctgcatcagctgcgcggccgcgtcggtcgttcccgcgatcgcgcctacgcc
tacttcctgtatccgaaggacaagacgctgaccgagacttcgtacgaccgcttggcgacg
atcgcgcagaacaacgacctgggctccggtatcgcggtggcgcaaaaggacctggagatg
cgcggcgccggcaacgtgctgggcgcggagcagtcggggcacatcgcgggtgtcggcttc
gatatgtatgtccggctcgttggggaggccgtcgatacgtacaaggcgctgatgacggga
gagacggtggatgccaccgaccagggcccgaaggaaatccgcatcgatttgcctgtcgac
gcccacatcccggacacctacgtcaactccgagcgcctgcgtctggagatttaccgcaag
cttgccgagtcacgcaatgacgccgacttggcgaccgtcaccgaggaaatggtcgaccgc
ttcggcccgctcccgcgcgaggtcgagcacctcgttgccgtagcccgcttgcgccagcag
gcccgtgtcgccggggtgtctgacatcttggtgcagggctcgcgcatcaagttccagccg
gtggagctgcaggactcgaagcaggtgcggctcaaacgcctgtacccgggcgcgaactac
cgcgccgcggccaaggcgctgcaggtgccgctgccacgcgccgccgctggtgtgaatcag
ccgaccctgcgcgataccgagcttgtgcagtgggtgtccgacttccttgcggatatgttc
ggggtggacaagaaggtggttactgcgagcgagtaa
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